genome.fa.s3353.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003353.1 Hibiscus syriacus cultivar Beakdansim tig00007058_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72685

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4194--4235	16	2.6	16	100	0	84	35	30	0	33	1.58
4194--4241	8	6.0	8	80	0	60	33	33	0	33	1.58
6917--6947	6	5.2	6	96	0	53	38	48	12	0	1.42
6958--7008	25	2.0	25	81	7	59	62	0	0	37	0.95
7017--7048	2	16.5	2	93	6	57	50	0	0	50	1.00
6946--7030	34	2.5	34	98	0	161	60	0	0	40	0.97
7074--7169	42	2.3	42	100	0	192	39	41	10	8	1.69
24224--24404	56	3.3	54	80	9	199	30	16	12	40	1.85
27150--27544	54	7.3	54	85	0	495	35	20	16	28	1.94
33153--33264	24	4.7	24	81	8	77	45	18	14	21	1.85
34362--34397	18	2.0	18	88	0	54	30	16	0	52	1.44
35707--35737	7	4.4	7	100	0	62	25	29	32	12	1.93
35735--35798	18	3.6	18	97	0	119	10	20	51	17	1.75
35729--35758	13	2.3	13	100	0	60	13	23	46	16	1.82
35729--35794	31	2.1	29	84	15	80	13	21	48	16	1.80
37954--38065	24	4.7	24	81	8	77	45	18	14	21	1.85
39161--39196	18	2.0	18	88	0	54	30	16	0	52	1.44
40507--40545	7	5.4	7	87	6	60	25	25	35	12	1.92
40508--40592	8	11.5	8	71	23	71	18	23	42	15	1.88
40507--40561	15	3.9	15	82	15	64	21	25	38	14	1.92
40508--40576	22	3.5	20	86	13	90	20	23	42	14	1.89
40537--40597	13	4.3	13	81	18	77	13	22	47	16	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40543--40616	18	4.4	18	80	16	95	13	21	48	16	1.80
40537--40615	31	2.5	31	95	0	140	15	21	46	16	1.83
47139--47192	5	10.8	5	100	0	108	38	0	20	40	1.53
48650--48693	22	2.0	22	91	8	72	50	0	0	50	1.00
59128--59538	83	5.0	82	81	3	477	32	17	21	28	1.96
60362--60413	26	2.0	27	88	3	79	57	21	1	19	1.50
60472--60532	32	1.9	32	93	0	104	55	18	6	19	1.63
61375--61422	3	16.0	3	88	0	69	29	33	2	35	1.69
63315--63345	14	2.2	14	94	0	53	61	6	0	32	1.21

Tables:   1

The End!