Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003354.1 Hibiscus syriacus cultivar Beakdansim tig00007059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52563

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3212--3251
20
2.1
20
86
9
57
47
2
0
50
1.14
3159--3325
84
2.0
84
94
3
291
42
4
7
44
1.54
5079--5131
19
2.8
19
91
0
88
32
18
26
22
1.97
11402--11427
13
2.0
13
100
0
52
7
30
0
61
1.24
12224--12294
34
2.1
33
89
2
106
22
29
15
32
1.95
12659--12726
21
3.3
21
93
2
120
27
17
33
20
1.95
17830--17909
24
3.5
22
75
14
83
23
26
22
27
2.00
20507--20558
19
2.8
19
80
8
63
26
34
13
25
1.93
20456--20612
64
2.4
64
81
5
190
33
25
14
26
1.94
20627--20675
19
2.6
19
84
9
57
24
30
18
26
1.98
21721--21768
19
2.5
20
82
3
62
52
6
10
31
1.60
22913--22952
21
1.9
21
94
0
71
32
10
7
50
1.64
23062--23121
30
2.0
30
96
0
111
30
5
20
45
1.72
23203--23260
21
2.8
21
100
0
116
20
36
18
24
1.95
23320--23375
21
2.7
21
97
0
103
19
33
17
28
1.95
24047--24168
63
1.9
63
83
9
160
36
22
18
23
1.95
24812--24895
23
3.7
23
91
0
132
20
23
26
29
1.99
27313--27382
3
23.3
3
94
0
86
58
0
8
32
1.28
27501--27591
18
5.4
18
72
15
86
45
3
4
47
1.39
27508--27591
33
2.5
33
94
0
141
45
3
4
46
1.41
27525--27583
15
3.7
15
74
12
55
44
5
5
45
1.47
28815--28847
2
16.5
2
93
0
57
45
0
3
51
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28851--28936
3
28.7
3
74
15
63
29
4
1
65
1.20
28997--29043
15
3.1
15
79
8
51
14
0
8
76
1.01
28994--29039
24
1.9
24
82
8
58
17
0
8
73
1.07
29074--29104
14
2.2
14
94
0
53
19
3
0
77
0.90
29123--29188
26
2.5
26
80
9
71
15
7
4
72
1.23
32111--32317
99
2.1
99
86
0
281
35
17
16
30
1.92
33634--34568
156
6.0
156
90
1
1345
36
22
14
26
1.93
34724--34973
85
2.9
85
85
1
331
36
17
17
28
1.93
36702--36734
2
16.5
2
100
0
66
48
0
0
51
1.00
36757--36792
17
2.1
18
89
5
56
13
2
2
80
0.93
36872--36906
3
11.7
3
93
0
61
28
0
2
68
1.04
38576--38638
11
6.1
10
77
17
58
68
1
3
26
1.14
38575--38643
31
2.2
32
85
15
90
66
1
4
27
1.19
38576--38632
21
2.8
20
84
7
62
70
1
3
24
1.13
39266--39318
27
2.0
27
85
10
74
50
0
0
49
1.00
39849--39897
21
2.4
21
86
3
64
26
4
2
67
1.19
39849--39896
10
4.7
10
84
5
60
25
4
2
68
1.18
48367--48502
71
1.9
70
89
4
211
35
20
13
30
1.92
48997--49036
19
2.0
20
90
4
64
40
5
17
37
1.72
49079--49119
21
2.0
21
85
0
55
24
21
24
29
1.99
49141--49184
21
2.1
21
95
0
79
22
20
25
31
1.98
49903--49946
23
1.9
23
85
0
61
31
27
25
15
1.96

Tables:   1

The End!