genome.fa.s3355.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003355.1 Hibiscus syriacus cultivar Beakdansim tig00007061_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54980

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6344--6522	3	58.7	3	86	3	250	61	1	1	35	1.13
6820--7720	113	7.9	113	91	0	1451	28	19	14	37	1.91
8278--9048	52	14.7	52	95	1	1355	37	22	15	24	1.93
8278--9048	105	7.4	104	95	1	1364	37	22	15	24	1.93
8278--9048	158	4.9	157	96	0	1377	37	22	15	24	1.93
9617--9661	18	2.7	16	82	6	54	55	8	4	31	1.51
9989--10031	1	43.0	1	85	0	59	0	6	0	93	0.37
9988--10032	9	5.1	9	86	5	65	0	11	0	88	0.50
22677--22858	3	59.7	3	86	3	256	61	1	1	35	1.13
31872--31908	3	13.3	3	83	16	53	0	27	0	72	0.84
31872--31908	8	4.5	8	96	3	65	0	27	0	72	0.84
31872--31908	11	3.3	12	82	17	53	0	27	0	72	0.84
32790--32830	18	2.3	18	87	4	57	60	0	7	31	1.24
38447--38481	2	17.5	2	100	0	70	51	0	0	48	1.00
39247--39294	23	2.0	23	84	4	60	35	12	0	52	1.40
39851--39908	23	2.5	23	94	0	89	20	27	13	37	1.91
42044--42105	30	2.1	30	100	0	124	30	12	0	56	1.37
43649--43696	25	2.1	23	81	14	55	52	10	8	29	1.65
44258--44307	25	2.0	26	92	4	84	54	4	4	38	1.38
45535--45584	21	2.4	21	100	0	100	24	30	28	18	1.97
45978--46004	13	2.1	13	100	0	54	37	40	0	22	1.54
47491--47527	10	3.9	10	79	13	51	59	27	0	13	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47493--47527	18	1.9	18	94	0	61	57	28	0	14	1.38

Tables:   1

The End!