genome.fa.s3357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003357.1 Hibiscus syriacus cultivar Beakdansim tig00007065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137594

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526--1110	55	10.8	54	74	15	419	28	25	14	30	1.95
577--896	108	3.0	107	89	6	511	27	28	14	30	1.95
882--1992	53	21.2	51	77	12	636	24	24	18	32	1.97
523--1127	109	5.6	107	79	11	338	27	26	14	30	1.95
1119--1984	51	16.7	53	80	10	731	22	25	19	32	1.97
1119--1980	153	5.5	153	83	8	865	22	25	19	32	1.97
1226--1980	204	3.6	202	81	9	821	22	25	19	32	1.98
2207--2361	36	4.3	36	89	1	222	19	20	24	36	1.95
2226--2360	71	1.9	71	92	3	227	17	22	22	37	1.94
13880--13926	22	2.2	22	84	3	60	46	2	4	46	1.34
15528--15569	2	21.0	2	100	0	84	50	0	0	50	1.00
20291--20316	2	13.0	2	100	0	52	50	0	0	50	1.00
20554--20596	15	3.1	14	80	12	54	62	0	0	37	0.95
20513--20576	29	2.2	30	83	8	78	48	1	3	46	1.27
21020--21079	21	2.9	21	85	5	77	23	26	21	28	1.99
21013--21088	21	3.6	21	80	3	64	25	28	18	27	1.98
22489--22552	20	3.2	20	84	0	74	43	20	18	17	1.88
22796--22839	22	2.0	22	95	0	79	18	15	45	20	1.85
23007--23081	21	3.6	21	71	10	73	20	17	22	40	1.92
23007--23101	41	2.3	41	87	0	145	22	16	23	37	1.93
23007--23134	20	6.7	19	70	19	79	22	17	23	35	1.95
23088--23115	13	2.2	13	100	0	56	25	21	21	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23068--23134	33	2.0	33	97	0	125	25	19	23	31	1.98
23758--23790	2	16.5	2	93	0	57	48	0	0	51	1.00
25137--25218	29	2.8	29	92	1	128	32	15	9	41	1.80
29893--29974	29	2.8	29	92	1	128	32	15	9	41	1.80
31280--31360	40	2.0	40	92	0	135	35	17	9	37	1.83
33244--33293	2	25.0	2	100	0	100	50	0	0	50	1.00
34701--34747	22	2.1	22	84	4	58	44	2	4	48	1.34
35585--35670	23	4.2	20	68	18	61	47	11	5	34	1.64
41126--41170	20	2.3	20	81	7	58	33	0	4	62	1.15
41849--41907	21	2.8	21	87	5	84	23	27	20	28	1.99
41841--41917	21	3.7	21	84	3	75	25	29	16	27	1.97
43543--43589	2	23.5	2	95	0	85	48	0	0	51	1.00
45773--45852	39	2.0	40	92	2	135	35	16	11	37	1.84
51004--51062	2	30.0	2	96	3	111	50	0	0	49	1.00
53219--53264	23	2.0	24	82	4	58	36	4	2	56	1.31
53351--53436	23	4.2	20	69	18	61	50	11	4	33	1.60
54115--54146	2	16.0	2	100	0	64	50	0	0	50	1.00
60074--60159	23	4.2	20	68	18	61	47	11	5	34	1.64
62841--62869	14	2.0	15	93	6	51	55	3	0	41	1.17
64702--64744	19	2.3	19	88	8	61	18	6	0	74	1.04
64721--64754	10	3.2	10	84	15	50	17	2	0	79	0.86
64701--64760	29	2.1	29	87	6	86	20	5	0	75	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65627--65670	19	2.4	18	81	14	54	34	0	4	61	1.16
65838--65898	8	8.1	8	74	20	51	47	1	0	50	1.10
65865--65906	22	1.9	22	90	0	66	50	0	0	50	1.00
66361--66419	21	2.8	21	84	5	75	20	25	23	30	1.98
68059--68088	2	15.5	2	93	6	53	50	0	0	50	1.00
72552--72637	23	4.2	20	68	18	61	47	11	5	34	1.64
73320--73379	2	30.0	2	100	0	120	50	0	0	50	1.00
75364--75392	14	2.0	15	93	6	51	55	3	0	41	1.17
77227--77261	19	1.9	19	88	11	56	22	2	0	74	0.95
78151--78197	18	2.3	22	79	13	57	34	0	4	61	1.15
78398--78428	2	15.5	2	100	0	62	48	0	0	51	1.00
78421--78456	16	2.2	17	90	5	56	63	0	0	36	0.94
80663--80784	3	40.7	3	93	0	208	64	0	2	32	1.06
81102--81769	113	5.9	113	92	0	987	30	19	14	36	1.91
82494--82863	83	4.5	83	87	2	521	36	22	13	26	1.92
82491--82863	166	2.2	166	96	0	685	36	22	13	26	1.92
82807--83019	52	4.1	52	98	0	399	37	23	14	24	1.93
84262--84309	10	4.4	11	80	17	55	0	16	0	83	0.65
84263--84309	21	2.2	24	78	17	50	0	17	0	82	0.66
84263--84312	17	3.1	15	78	13	55	0	18	0	82	0.68
96592--96641	22	2.3	22	80	16	59	6	16	10	68	1.38
97113--97260	3	49.7	3	91	1	244	64	0	2	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97542--97585	21	2.1	21	82	0	52	25	27	18	29	1.98
97550--97608	21	2.8	21	86	0	82	20	23	23	32	1.98
101460--101540	40	2.0	40	92	0	135	35	14	11	38	1.82
103455--103484	2	15.0	2	100	0	60	50	0	0	50	1.00
104903--104969	22	2.9	23	80	10	66	47	2	4	44	1.38
104737--105152	227	1.8	226	84	2	564	37	15	8	38	1.79
105916--105951	18	2.0	18	88	0	54	38	0	0	61	0.96
110401--110445	20	2.2	20	88	7	65	24	6	0	68	1.13
112035--112093	21	2.8	21	84	5	75	20	25	23	30	1.98
115727--115805	37	2.0	38	85	9	106	32	15	12	39	1.85
118114--119314	597	2.0	597	99	0	2359	35	14	11	38	1.83
119759--119806	22	2.2	22	88	0	69	47	2	4	45	1.33
120644--120729	23	4.2	20	68	18	61	47	11	5	34	1.64
121419--121443	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!