Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003358.1 Hibiscus syriacus cultivar Beakdansim tig00007066_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55022

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1227--1272
21
2.2
21
88
7
67
39
2
15
43
1.59
1272--1338
36
1.9
35
85
11
93
46
2
4
46
1.38
1306--1364
24
2.5
24
86
8
86
50
5
1
42
1.34
1269--1403
60
2.3
57
87
6
182
47
3
5
43
1.43
1330--1423
36
2.5
38
81
10
122
47
4
6
41
1.48
1389--1417
14
2.1
14
100
0
58
41
6
6
44
1.58
1326--1545
37
6.1
36
71
14
152
43
4
8
44
1.53
1383--1523
68
2.1
66
84
10
178
40
4
9
45
1.57
1326--1545
74
3.1
71
77
10
225
43
4
8
44
1.53
1539--1602
26
2.5
26
79
20
73
39
3
6
51
1.43
2120--2162
22
2.0
22
86
9
61
39
2
13
44
1.57
2198--2273
22
3.5
21
87
7
109
46
3
6
43
1.48
2139--2342
74
2.7
74
82
13
226
41
2
9
45
1.52
2276--2322
18
2.6
19
86
6
62
36
4
14
44
1.65
3380--3448
23
3.0
23
82
0
84
30
24
26
18
1.98
7919--7981
20
2.9
21
79
9
65
15
25
34
23
1.95
16652--16719
13
5.2
13
85
0
73
27
20
16
35
1.94
21334--21360
4
6.8
4
100
0
54
77
0
0
22
0.76
22346--22410
18
3.6
18
77
8
69
38
23
1
36
1.64
22365--22411
6
7.8
6
81
9
51
36
19
2
42
1.63
22686--22749
23
2.8
23
85
0
92
32
26
25
15
1.95
45058--45112
22
2.4
22
84
6
74
30
16
29
23
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45066--45108
22
2.0
22
95
0
77
30
16
32
20
1.95
45506--45918
201
2.1
201
84
3
546
32
19
20
27
1.97
46763--46804
22
2.0
22
90
4
68
38
0
11
50
1.40
46570--46774
2
103.5
2
80
5
229
45
1
5
47
1.37
46765--46811
22
2.2
21
84
3
58
40
2
10
46
1.50
46775--46911
38
3.6
37
80
11
136
43
3
10
43
1.56
46926--46989
28
2.2
30
86
8
89
39
1
4
54
1.31
51241--51428
99
1.9
99
83
2
243
32
10
27
29
1.89
54185--54226
22
1.9
22
95
0
75
38
26
9
26
1.87

Tables:   1

The End!