genome.fa.s3360.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003360.1 Hibiscus syriacus cultivar Beakdansim tig00007070_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89199

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605--637	9	3.9	9	92	7	52	48	0	0	51	1.00
605--637	15	2.1	17	88	11	52	48	0	0	51	1.00
13511--13563	14	3.9	13	80	14	54	26	5	0	67	1.12
16470--16551	12	6.2	13	71	12	60	17	4	3	74	1.14
16897--16970	29	2.5	30	95	4	141	45	10	20	22	1.82
16729--16941	117	1.8	117	86	3	311	46	13	19	20	1.83
16999--17056	28	2.1	28	90	0	89	44	12	17	25	1.83
29206--29250	22	2.0	23	82	4	56	66	8	0	24	1.20
29339--29385	14	3.0	16	79	20	55	27	4	4	63	1.31
32504--32532	14	2.1	14	100	0	58	27	0	27	44	1.54
32753--32780	3	9.3	3	100	0	56	0	0	32	67	0.91
34318--34349	14	2.3	14	94	0	55	9	15	25	50	1.74
34319--34369	24	2.1	24	85	0	66	13	11	19	54	1.69
35427--35493	16	4.3	16	84	3	84	10	11	20	56	1.64
35423--35485	32	2.0	32	90	0	99	7	14	23	53	1.66
35555--35585	16	1.9	16	100	0	62	6	12	22	58	1.58
38206--38245	21	1.9	21	89	0	62	55	0	0	45	0.99
38981--39027	20	2.3	21	78	10	62	63	8	2	25	1.34
40317--40439	3	40.7	3	91	1	201	63	0	0	35	1.00
40736--41420	113	6.0	113	93	1	1046	28	20	14	37	1.91
41809--41849	18	2.4	18	84	8	59	34	7	14	43	1.73
42057--42859	50	15.8	50	95	1	1187	37	22	13	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43800--43882	1	83.0	1	75	0	76	0	12	0	87	0.53
43799--43881	16	5.5	15	85	8	107	0	13	0	86	0.56
43800--43888	23	3.8	24	82	10	103	0	13	0	86	0.57
43800--43888	12	7.8	12	80	13	100	0	13	0	86	0.57
54461--54502	18	2.4	17	88	11	59	69	2	0	28	1.01
55161--55194	15	2.1	16	89	10	52	55	0	0	44	0.99
55241--55287	20	2.3	21	78	10	62	63	8	2	25	1.34
56572--56698	3	41.7	3	88	3	191	62	0	0	35	1.06
57537--57743	20	10.4	20	85	11	134	37	23	17	20	1.94
57557--57708	60	2.5	59	83	11	218	38	25	17	18	1.92
57532--57783	80	3.2	79	80	15	300	38	24	17	20	1.93
57577--57849	20	13.7	21	81	12	160	37	24	16	21	1.93
57577--57804	40	5.7	40	75	16	186	38	25	16	20	1.93
57772--57843	19	3.6	19	86	5	90	34	23	11	30	1.90
57592--57851	60	4.3	60	74	16	200	36	24	15	23	1.93
57516--57851	40	8.4	40	73	16	177	36	24	16	23	1.94
58019--58057	16	2.5	15	84	8	51	28	5	0	66	1.12
58789--58842	24	2.2	24	90	0	81	22	18	18	40	1.91
59020--59044	3	8.3	3	100	0	50	64	0	36	0	0.94
61049--61084	18	2.0	18	88	0	54	55	22	2	19	1.56
61514--61689	66	2.6	65	87	8	248	52	17	2	27	1.58
63018--63111	42	2.2	42	90	3	145	22	21	37	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63018--63113	21	4.6	21	81	5	113	22	20	36	19	1.95
63018--63140	42	2.9	42	85	2	131	23	19	36	20	1.95
65282--65308	14	1.9	14	100	0	54	48	22	22	7	1.75
65707--65764	22	2.7	21	92	5	73	22	12	44	20	1.84
65714--65764	22	2.3	22	100	0	102	19	13	45	21	1.85
65923--66194	20	13.6	20	79	10	236	19	14	23	42	1.88
65923--66234	60	5.2	59	80	7	285	19	14	25	41	1.89
86017--86068	20	2.7	19	91	8	79	19	25	34	21	1.96

Tables:   1

The End!