genome.fa.s3361.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003361.1 Hibiscus syriacus cultivar Beakdansim tig00007071_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69610

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
646--691	18	2.6	19	83	13	62	32	2	13	52	1.52
1032--1786	200	3.8	198	85	5	918	35	14	17	32	1.90
1650--1921	135	2.0	136	93	2	467	35	13	18	32	1.89
1451--2117	335	2.0	335	96	0	1246	35	13	18	32	1.90
1786--2677	200	4.5	200	82	6	1014	36	13	17	32	1.89
1255--2321	535	2.0	536	87	3	1544	35	14	17	32	1.91
5223--5275	25	2.1	25	92	0	88	37	3	7	50	1.49
5568--6929	399	3.4	396	84	5	1676	39	13	16	31	1.87
5568--6929	201	6.8	199	83	4	1543	39	13	16	31	1.87
5567--6911	599	2.2	596	83	5	1685	39	13	15	30	1.87
10434--11357	201	4.6	199	82	6	1018	40	13	14	31	1.85
10434--11357	400	2.3	398	83	5	1100	40	13	14	31	1.85
19783--19831	25	2.0	24	84	7	64	38	14	10	36	1.80
19806--19879	30	2.5	29	84	2	85	37	12	6	43	1.69
20821--20858	18	2.1	19	85	5	51	34	5	2	57	1.35
21020--21055	13	2.4	16	82	17	51	16	5	2	75	1.12
22233--22265	2	16.5	2	100	0	66	48	0	0	51	1.00
24662--24695	17	2.1	17	94	5	61	38	0	17	44	1.49
25949--25975	2	13.5	2	100	0	54	51	0	0	48	1.00
26028--26075	21	2.3	21	96	0	87	33	14	6	45	1.70
26387--26453	2	33.5	2	100	0	134	50	0	0	49	1.00
26525--26562	20	1.9	20	88	0	58	23	23	21	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30104--30151	21	2.3	21	96	0	87	33	14	6	45	1.70
30463--30487	2	12.5	2	100	0	50	52	0	0	48	1.00
30563--30620	20	2.7	20	86	10	71	24	22	24	29	1.99
30773--30812	20	2.0	20	85	5	53	37	17	10	35	1.83
40168--40204	18	2.1	18	89	0	56	18	45	21	13	1.84
40182--40225	13	3.4	13	90	0	61	15	40	25	18	1.90
40216--40252	15	2.5	15	86	0	56	16	29	24	29	1.96
41697--41742	20	2.3	20	96	0	83	36	10	17	34	1.85
43650--43723	13	5.3	13	72	15	67	18	20	43	17	1.88
43656--43729	31	2.4	31	86	4	105	17	20	44	17	1.87
54781--54823	8	5.4	8	89	8	61	0	30	0	69	0.88
57488--57522	18	1.9	18	94	0	61	28	31	22	17	1.96
57834--57882	18	2.7	18	84	9	55	48	24	0	26	1.51
59562--59667	54	2.0	54	88	3	160	33	11	23	31	1.90
61365--61406	19	2.2	19	91	0	66	61	2	0	35	1.09
62350--62397	21	2.3	22	78	10	55	25	4	16	54	1.60
62498--62537	19	2.1	19	90	0	62	57	2	5	35	1.34

Tables:   1

The End!