genome.fa.s3363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003363.1 Hibiscus syriacus cultivar Beakdansim tig00007074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77222

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--60	20	2.6	20	87	0	86	13	23	23	40	1.89
1328--1422	41	2.3	41	92	3	156	29	36	14	18	1.91
1963--2029	21	3.2	21	68	6	55	23	34	20	20	1.97
3528--3582	14	3.6	14	73	21	56	45	20	23	10	1.82
3511--3603	33	2.8	33	93	4	154	44	19	22	13	1.86
3511--3607	19	5.7	18	68	24	68	44	19	22	13	1.86
3575--3613	19	2.1	19	95	0	69	48	23	15	12	1.79
3614--3789	19	9.7	19	72	13	138	11	21	19	46	1.82
3639--3692	14	3.5	14	73	22	54	11	24	20	44	1.83
3619--3711	33	2.8	33	96	0	168	11	23	19	45	1.83
3619--3796	33	4.9	39	84	5	148	13	21	19	45	1.84
5129--5154	11	2.4	11	100	0	52	26	38	7	26	1.83
7234--7360	20	6.3	20	78	7	89	31	18	22	28	1.97
7314--7359	21	2.2	21	84	0	56	36	15	28	19	1.92
8282--8339	24	2.4	24	94	0	98	58	12	15	13	1.63
13132--13157	9	2.9	9	100	0	52	11	0	0	88	0.52
17016--17060	24	2.0	23	86	8	65	22	6	0	71	1.09
18142--18320	70	2.6	70	94	0	313	54	12	13	19	1.71
26368--26460	40	2.3	40	81	5	107	19	20	19	40	1.91
27556--27596	21	2.0	21	100	0	82	24	14	19	41	1.89
29905--29955	20	2.5	20	72	12	50	29	17	13	39	1.88
29939--29976	20	1.9	20	88	0	58	26	21	10	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30509--30699	100	1.9	100	89	0	292	42	14	17	25	1.87
33082--33172	45	2.0	46	86	2	130	28	18	25	27	1.98
41175--41265	45	2.0	46	91	2	148	26	18	26	28	1.98
43852--43919	23	3.0	23	84	0	91	19	26	25	29	1.98
44658--44697	21	1.9	21	94	0	71	27	17	12	42	1.85
46504--46569	21	3.1	21	86	4	96	27	21	25	25	1.99
47945--48105	64	2.5	63	84	8	191	27	21	18	33	1.96
49045--49082	2	19.0	2	100	0	76	50	0	0	50	1.00
51516--51587	22	3.3	22	88	5	110	27	20	25	26	1.99
51524--51586	21	3.0	21	92	2	99	23	23	26	25	2.00
52962--53122	64	2.5	63	84	8	191	27	21	18	33	1.96
53932--54014	38	2.2	38	82	0	94	38	16	2	42	1.62
56265--56311	17	2.8	17	93	0	85	10	21	48	19	1.78
56253--56295	22	2.0	22	95	0	77	11	23	46	18	1.82
63543--63642	9	10.3	9	74	14	74	29	27	28	16	1.97
63549--63642	39	2.4	38	82	10	118	29	27	26	15	1.96
63549--63643	10	9.8	9	73	13	64	29	27	26	16	1.97

Tables:   1

The End!