genome.fa.s3365.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003365.1 Hibiscus syriacus cultivar Beakdansim tig00007077_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70630

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11589--11792	100	2.0	100	91	3	331	32	27	12	27	1.92
12883--12921	18	2.2	18	95	0	69	20	35	0	43	1.52
15387--15430	21	2.0	22	86	4	63	27	34	22	15	1.95
16041--16108	24	2.9	24	84	2	84	29	22	26	22	1.99
18636--18677	2	21.0	2	100	0	84	50	0	0	50	1.00
19693--19729	19	1.9	19	88	0	56	35	24	18	21	1.96
19757--19802	21	2.2	21	96	3	85	28	32	19	19	1.96
19798--19921	21	5.9	21	72	12	103	23	20	22	33	1.97
19822--19921	42	2.4	42	91	0	164	24	19	22	35	1.96
21084--21143	6	10.0	6	98	0	84	6	10	50	33	1.62
21232--21298	19	3.3	19	76	15	80	32	19	22	25	1.97
21240--21306	19	3.3	19	76	12	71	37	20	20	20	1.95
21302--21354	21	2.5	21	90	0	79	18	18	32	30	1.96
22401--22441	21	1.9	22	85	5	57	51	0	7	41	1.30
24528--24569	21	2.0	21	81	9	50	50	2	0	47	1.14
29075--29102	2	14.0	2	100	0	56	50	0	0	50	1.00
36623--36736	54	2.1	54	81	3	131	27	11	21	39	1.88
41647--41679	16	2.1	16	88	11	50	54	0	0	45	0.99
43160--43218	30	2.0	30	93	6	102	33	5	16	44	1.70
43298--43376	21	3.8	21	94	0	131	20	37	20	21	1.94
43418--43485	20	3.3	20	76	11	75	20	23	23	32	1.98
43604--43643	20	1.9	22	90	10	66	42	42	5	10	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44496--44552	30	1.9	30	85	0	78	35	26	15	22	1.94
45226--45382	64	2.5	64	75	14	146	28	18	19	33	1.96
49057--49125	30	2.2	30	82	15	86	34	5	15	43	1.71
49066--49125	29	2.0	30	90	6	95	33	6	15	45	1.72
49205--49303	21	4.8	20	81	10	119	22	35	20	22	1.96
49324--49417	20	4.7	20	81	7	100	18	24	23	34	1.96
52032--52106	39	1.9	39	88	0	114	25	30	12	32	1.92
54907--55000	47	2.0	47	89	0	143	23	19	12	44	1.85
64509--64552	2	22.0	2	100	0	88	50	0	0	50	1.00
65219--65283	30	2.2	30	81	13	73	40	3	4	52	1.38
65497--65546	2	25.0	2	100	0	100	50	0	0	50	1.00
65683--65728	21	2.2	21	88	7	67	41	6	0	52	1.27
65744--65801	15	3.9	15	80	10	66	37	3	0	58	1.15
67660--67787	62	2.0	63	92	1	213	43	17	21	17	1.88

Tables:   1

The End!