genome.fa.s3366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003366.1 Hibiscus syriacus cultivar Beakdansim tig00007078_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64914

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8505--8530	2	13.0	2	100	0	52	50	0	0	50	1.00
9084--9136	24	2.2	25	82	6	72	37	26	9	26	1.87
9093--9138	24	1.9	24	95	0	83	34	30	6	28	1.82
10029--10069	21	2.0	21	100	0	82	26	29	4	39	1.77
11410--11475	24	2.7	25	81	6	73	34	22	10	31	1.88
18608--18693	14	6.4	14	77	10	90	15	13	11	59	1.62
18609--18688	24	3.2	24	70	19	72	15	12	12	60	1.60
18869--18924	24	2.3	24	81	0	67	10	16	19	53	1.71
20425--20517	21	4.6	20	78	4	96	38	18	24	18	1.92
20422--20517	41	2.3	41	98	0	183	39	17	23	18	1.92
20425--20517	20	4.6	20	78	4	96	38	18	24	18	1.92
20444--20578	41	3.3	41	81	6	123	37	20	21	20	1.94
20506--20600	20	4.7	20	80	2	91	34	24	17	23	1.96
20788--20831	22	2.0	22	95	0	79	20	45	15	18	1.85
21090--21127	20	1.9	20	88	0	58	13	15	21	50	1.78
22446--22490	18	2.5	18	85	0	63	26	42	15	15	1.87
22963--23029	20	3.4	20	81	2	73	38	23	22	14	1.92
23018--23075	14	3.9	14	79	16	71	48	25	17	8	1.75
23002--23092	32	2.8	33	94	3	166	47	23	18	10	1.80
22963--23097	19	7.6	19	71	19	85	42	23	20	12	1.86
23109--23166	14	3.9	14	79	16	71	8	17	25	48	1.75
23104--23182	32	2.4	33	95	2	142	10	18	24	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23123--23240	20	6.4	19	77	11	95	13	20	24	41	1.88
25084--25136	14	3.9	13	76	9	52	33	0	18	47	1.49
25229--25305	14	4.7	15	74	22	59	45	19	22	12	1.84
25239--25305	18	3.8	19	81	18	92	46	17	22	13	1.83
25331--25381	20	2.5	20	93	0	84	19	23	23	33	1.97
25747--25782	14	2.6	14	90	0	54	30	0	22	47	1.52
25899--25966	19	3.8	19	78	20	76	47	17	23	11	1.81
25992--26042	20	2.5	20	93	0	84	19	23	23	33	1.97
27104--27157	24	2.2	24	83	0	63	27	16	16	38	1.90
29644--29741	19	5.7	19	69	22	90	43	19	24	12	1.85
29644--29737	33	2.8	33	98	0	179	43	19	24	12	1.85
29737--29779	20	2.2	20	87	4	61	16	18	23	41	1.89
29765--29798	14	2.4	14	85	0	50	8	23	20	47	1.78
29920--29956	14	2.6	14	91	0	65	45	24	0	29	1.53
31315--31381	21	3.2	21	68	4	55	19	20	35	23	1.95
31315--31437	42	2.9	41	80	7	113	22	17	36	22	1.95
33464--33562	33	3.0	33	87	1	135	40	26	22	11	1.87
33439--33604	20	9.1	19	72	16	109	43	23	21	12	1.85
34179--34230	20	2.6	20	84	0	68	23	19	28	28	1.98
34491--34557	33	2.0	33	97	0	125	32	4	11	50	1.59
38485--38518	15	2.3	15	90	5	52	29	2	17	50	1.61
40849--40888	14	3.1	13	82	10	55	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41426--41463	16	2.4	16	95	0	67	18	15	57	7	1.62
41581--41700	3	40.0	3	81	0	141	57	0	1	40	1.09
41581--41700	27	4.3	27	92	3	186	57	0	1	40	1.09
42463--42499	16	2.2	17	90	4	58	62	10	0	27	1.28
43243--43325	33	2.5	33	75	20	82	48	0	3	48	1.19
43314--43364	25	2.0	25	88	0	75	41	0	17	41	1.50
43362--43435	24	3.0	23	76	17	78	51	1	5	41	1.33
43440--43501	32	2.0	30	81	15	72	53	3	8	35	1.47
45069--45112	2	22.0	2	100	0	88	0	50	0	50	1.00
49680--49990	155	2.0	153	98	1	597	40	16	20	22	1.91
51451--51497	19	2.5	19	100	0	94	70	14	8	6	1.32
55146--55187	20	2.0	21	90	4	68	40	14	0	45	1.45
57138--57203	28	2.4	29	80	7	84	39	10	21	28	1.86
59230--59311	38	2.2	37	95	4	148	32	13	19	34	1.91

Tables:   1

The End!