Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003367.1 Hibiscus syriacus cultivar Beakdansim tig00007079_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105903

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
731--770
14
2.6
15
84
15
55
40
2
0
57
1.12
2189--2259
36
2.0
36
88
2
108
46
16
9
26
1.79
2932--3033
33
3.1
33
81
8
118
17
10
10
60
1.57
7204--7351
72
2.0
73
88
1
217
41
15
18
24
1.89
8100--8203
54
1.9
54
92
0
172
38
13
18
29
1.89
9336--9440
36
2.9
36
73
8
104
33
17
13
36
1.88
9288--9433
73
2.0
73
89
0
220
32
17
10
39
1.84
9712--9750
13
2.7
15
80
15
55
43
0
0
56
0.99
10172--10531
139
2.6
134
83
5
429
39
15
18
27
1.90
10473--10518
23
2.0
22
84
12
58
50
10
23
15
1.75
10172--10549
134
2.8
132
79
10
388
39
15
17
28
1.90
11950--11993
23
1.9
23
85
0
61
47
0
2
50
1.13
11977--12016
2
20.0
2
94
0
71
52
0
0
47
1.00
12251--12306
2
28.0
2
96
0
103
48
0
1
50
1.11
14617--14658
2
21.5
2
95
4
77
50
0
0
50
1.00
15804--15839
14
2.6
14
86
0
54
47
8
2
41
1.48
15827--15887
25
2.4
26
83
8
81
29
4
19
45
1.71
18313--18368
24
2.5
23
80
11
62
44
0
0
55
0.99
24261--24309
23
2.1
23
85
7
64
59
12
2
26
1.44
28133--28176
22
2.0
22
100
0
88
31
22
9
36
1.86
29443--29482
20
2.0
20
100
0
80
20
0
5
75
0.99
29622--29671
7
7.1
7
76
15
50
58
0
0
42
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29622--29670
13
3.5
13
88
8
62
59
0
0
40
0.98
29787--29832
23
2.0
23
100
0
92
47
8
4
39
1.54
31328--31463
69
2.0
69
83
0
173
30
26
13
29
1.94
32893--32918
13
2.0
13
100
0
52
38
0
0
61
0.96
44976--45040
25
2.6
25
97
2
123
9
21
21
47
1.78
55085--55166
36
2.2
36
78
8
85
52
2
2
42
1.27
55288--55330
20
2.3
19
84
11
61
23
27
9
39
1.85
55293--55330
20
1.9
20
94
0
67
23
26
10
39
1.87
56843--56892
23
2.2
23
88
0
73
24
12
4
60
1.49
59556--59787
20
11.7
20
85
1
279
33
23
20
22
1.97
68136--68168
16
2.1
16
100
0
66
57
24
12
6
1.57
68233--68307
10
7.7
10
69
21
61
57
21
12
9
1.62
68237--68301
16
4.1
16
95
0
121
56
23
12
7
1.61
69050--69105
14
4.3
14
76
17
66
53
23
12
10
1.69
69043--69104
24
2.6
24
89
0
97
54
22
11
11
1.67
73944--74057
59
1.9
60
89
1
176
52
21
7
18
1.70
90792--90818
3
9.0
3
100
0
54
66
0
33
0
0.92

Tables:   1

The End!