genome.fa.s3369.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003369.1 Hibiscus syriacus cultivar Beakdansim tig00007083_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74071

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3546--3582	17	2.2	17	90	9	58	35	0	2	62	1.10
5572--5603	3	10.7	3	93	0	55	34	28	34	3	1.73
11053--11097	18	2.6	18	85	3	56	31	24	8	35	1.86
16974--17039	22	3.0	21	80	8	78	43	15	18	22	1.87
17073--17115	21	2.0	21	95	0	77	23	25	20	30	1.99
17795--17891	31	3.1	32	88	4	144	35	19	16	28	1.94
22028--22064	18	2.1	18	90	10	58	54	5	0	40	1.24
27191--27238	26	1.9	24	84	16	62	58	4	0	37	1.18
27562--27619	21	2.8	22	85	12	79	41	1	3	53	1.28
27582--27619	11	3.5	11	85	10	51	42	2	2	52	1.29
27651--27695	22	2.0	22	83	8	56	42	4	4	48	1.43
36686--36717	2	16.0	2	100	0	64	50	0	0	50	1.00
38496--38643	40	3.8	40	90	1	219	45	10	18	25	1.80
43600--43757	21	7.8	20	72	7	86	38	25	17	18	1.92
43724--43917	20	9.6	20	81	5	221	35	25	19	19	1.95
43724--43917	60	3.2	60	83	0	253	35	25	19	19	1.95
44301--44371	33	2.2	33	92	0	115	11	22	18	47	1.80
44451--44557	21	5.6	20	70	17	93	46	17	24	11	1.81
44449--44556	41	2.9	36	83	12	132	46	17	25	11	1.81
44492--44581	31	2.8	32	86	6	110	46	22	22	8	1.79
44577--44674	19	5.7	19	70	22	90	10	22	22	44	1.82
44600--44688	14	5.6	14	68	23	52	8	22	23	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44582--44696	33	3.5	33	96	0	212	9	22	20	46	1.79
46392--46952	93	6.1	93	99	0	1099	21	12	19	46	1.83
47000--47128	19	7.3	19	75	17	125	45	28	17	8	1.77
47036--47128	33	2.8	32	91	4	150	46	27	18	7	1.76
47000--47128	52	2.5	52	74	14	140	45	28	17	8	1.77
47124--47258	19	7.6	19	75	16	128	11	19	23	45	1.82
47146--47202	14	3.7	14	77	20	60	10	21	22	45	1.82
47129--47221	33	2.8	33	95	0	168	10	20	21	47	1.80
49184--49219	14	2.6	14	95	0	63	33	0	22	44	1.53
49326--49423	19	5.4	19	84	13	143	45	17	22	14	1.84
49326--49441	53	2.2	53	98	1	225	43	18	24	13	1.86
49448--49681	52	4.6	54	83	11	239	13	22	18	45	1.84
49508--49562	14	3.6	14	73	21	56	10	23	20	45	1.82
49448--49667	85	2.6	85	96	2	397	13	22	18	45	1.84
49448--49681	33	6.9	33	79	13	185	13	22	18	45	1.84
51960--51984	12	2.1	12	100	0	50	0	28	0	72	0.86
52159--52205	24	2.0	24	87	8	69	38	21	14	25	1.92
52887--53156	20	13.5	20	87	2	256	20	18	24	37	1.94
52887--53156	40	6.8	40	85	5	289	20	18	24	37	1.94
53123--53220	21	4.8	20	75	15	83	22	17	22	37	1.94
53123--53221	42	2.4	43	78	8	107	22	17	23	37	1.94
54483--54561	31	2.5	31	89	0	113	32	13	15	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55233--55280	25	1.9	25	91	0	78	43	4	16	35	1.67
55873--55904	3	10.7	3	100	0	64	65	0	34	0	0.93
56129--56162	3	11.3	3	100	0	68	0	32	0	67	0.91
57305--57438	72	1.9	72	85	3	189	41	2	7	48	1.46
60893--60944	20	2.6	20	93	0	86	36	13	21	28	1.91
67933--67969	17	2.2	17	100	0	74	51	16	0	32	1.45
68086--68115	6	4.8	6	92	8	51	50	3	13	33	1.58
68687--68715	13	2.3	13	94	5	51	41	37	0	20	1.53
70519--70568	2	25.0	2	100	0	100	50	0	0	50	1.00
71313--71604	148	2.0	147	88	2	433	26	12	18	42	1.86
73616--73770	59	2.6	59	76	7	161	32	27	5	34	1.81

Tables:   1

The End!