genome.fa.s3370.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003370.1 Hibiscus syriacus cultivar Beakdansim tig00007084_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109560

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190--279	43	2.1	43	83	8	112	52	4	13	30	1.60
6264--6290	2	13.5	2	100	0	54	0	48	0	51	1.00
6869--6923	24	2.3	23	81	3	65	52	1	1	43	1.22
8510--8580	32	2.2	32	94	0	124	42	9	12	35	1.76
12050--12188	60	2.3	60	76	4	138	34	12	19	33	1.90
15248--15315	29	2.3	29	94	0	118	27	5	20	45	1.74
17090--17118	2	14.5	2	100	0	58	51	0	0	48	1.00
18123--18150	11	2.5	11	100	0	56	35	7	0	57	1.26
18412--18472	26	2.4	26	86	8	81	52	1	3	42	1.27
22610--22661	25	2.1	25	85	3	70	36	7	0	55	1.29
25427--25497	11	6.5	11	83	0	79	15	7	19	57	1.61
25424--25497	33	2.2	33	85	0	103	14	8	18	58	1.61
25424--25497	22	3.4	22	80	0	94	14	8	18	58	1.61
40604--40920	174	1.8	174	84	6	437	39	21	16	22	1.92
42203--42265	30	2.1	31	87	3	92	44	12	4	38	1.64
45640--45726	25	3.3	26	71	19	74	45	3	0	50	1.18
45651--45726	24	3.0	24	74	14	73	46	3	0	50	1.20
45653--45729	25	3.0	26	80	12	90	45	3	0	50	1.20
45653--45750	27	3.8	27	77	9	82	43	4	0	52	1.20
45883--45955	31	2.4	31	90	0	110	52	10	5	31	1.59
62215--62251	16	2.3	16	95	0	65	67	0	2	29	1.04
64480--64531	2	26.0	2	90	0	77	50	0	1	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66179--66483	153	2.0	153	91	1	495	32	13	21	32	1.92
67398--67438	19	2.2	19	83	12	50	68	0	4	26	1.10
67635--67664	2	15.0	2	100	0	60	50	0	0	50	1.00
67662--67687	4	6.5	4	100	0	52	26	0	0	73	0.84
69012--69315	152	2.0	152	94	0	527	28	18	14	37	1.91
78073--78114	20	2.2	19	86	4	57	23	23	4	47	1.70
78205--78307	52	2.0	52	94	0	179	49	13	10	26	1.74
80138--80163	5	5.2	5	100	0	52	0	19	57	23	1.40
81107--81218	33	3.4	33	83	1	116	24	29	35	10	1.89
81134--81219	10	8.0	10	73	14	64	24	27	37	10	1.88
81145--81231	33	2.6	33	87	3	113	25	26	39	9	1.86
81235--81319	29	2.9	29	87	3	127	22	30	34	12	1.92
82429--82499	33	2.2	33	92	0	115	11	22	18	47	1.80
82620--82674	14	3.6	14	73	21	56	40	23	27	9	1.85
82620--82690	33	2.2	33	92	0	115	42	25	23	8	1.82
82686--82787	19	5.9	19	74	19	91	10	24	21	43	1.84
82708--82782	14	4.7	15	76	20	64	9	25	24	41	1.84
82686--82790	51	2.0	52	92	1	176	10	24	20	43	1.83
84488--84959	184	2.5	186	99	0	930	22	12	19	46	1.83
84488--84959	93	5.1	93	98	1	930	22	12	19	46	1.83
85003--85131	19	7.3	19	75	17	125	45	28	17	8	1.77
85039--85131	33	2.8	32	91	4	150	46	27	18	7	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85003--85131	52	2.5	52	74	14	140	45	28	17	8	1.77
85127--85247	19	6.6	19	80	10	135	12	18	23	45	1.83
87150--87185	14	2.6	14	95	0	63	33	0	22	44	1.53
87291--87392	19	5.6	19	84	13	151	44	17	23	14	1.86
87421--87798	19	21.4	19	81	15	474	14	20	17	47	1.82
87399--87770	52	7.0	52	90	6	529	14	20	17	47	1.83
87421--87731	71	4.4	71	89	8	506	14	20	17	47	1.82
90102--90126	12	2.1	12	100	0	50	0	28	0	72	0.86
90301--90347	24	2.0	24	87	8	69	38	21	14	25	1.92
91029--91397	20	18.5	20	86	4	458	20	18	26	34	1.96
92250--92285	18	2.0	18	88	0	54	33	5	5	55	1.46
92455--92500	17	2.5	19	79	13	60	43	0	0	56	0.99
92445--92504	11	6.0	10	72	20	54	43	0	0	56	0.99
95630--95827	43	4.6	42	73	9	123	23	17	7	52	1.69
95673--95827	43	3.6	42	74	12	136	23	16	6	54	1.65
95673--95836	87	1.9	88	85	3	233	23	15	6	54	1.65
95673--95848	44	4.1	43	74	8	144	23	16	6	52	1.67
98807--98840	17	1.9	18	88	5	52	41	0	0	58	0.98
101776--101837	31	2.0	31	83	0	79	38	16	11	33	1.84
102966--102992	10	2.7	10	100	0	54	18	29	22	29	1.97
104295--104413	60	2.0	60	83	3	150	36	14	17	31	1.90

Tables:   1

The End!