genome.fa.s3371.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003371.1 Hibiscus syriacus cultivar Beakdansim tig00007085_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70510

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4735--4773	21	1.9	19	85	10	51	69	0	0	30	0.89
4749--4781	16	2.1	16	94	0	57	63	0	0	36	0.95
8364--8446	7	12.0	7	80	2	51	44	28	0	26	1.54
8364--8426	14	4.6	14	80	5	58	44	30	0	25	1.54
8364--8446	21	4.0	21	77	3	69	44	28	0	26	1.54
8408--8433	13	2.0	13	100	0	52	46	23	0	30	1.53
8538--8628	7	13.4	7	74	6	53	42	30	1	25	1.62
9982--10032	23	2.2	23	89	0	75	33	19	23	23	1.97
9990--10036	23	2.0	23	95	0	85	36	14	21	27	1.93
10079--10140	31	2.0	31	84	6	81	22	4	19	53	1.64
11088--11148	27	2.2	27	80	8	70	42	0	8	49	1.32
13055--13095	2	21.0	2	95	5	75	51	0	0	48	1.00
14408--14460	25	2.1	25	92	0	88	30	30	22	16	1.96
22440--22552	60	1.9	60	83	0	145	36	14	14	35	1.86
29393--29471	33	2.5	32	89	4	124	37	37	11	12	1.80
29426--29541	62	1.9	61	83	5	153	39	31	12	15	1.85
39807--39851	23	2.0	23	90	0	72	22	20	26	31	1.98
39773--39939	83	2.0	83	88	2	246	21	29	20	28	1.98
40277--40320	21	2.1	21	91	0	70	29	0	15	54	1.42
40290--40355	28	2.4	28	82	10	98	31	0	12	56	1.36
40877--40920	23	2.0	23	81	4	54	50	11	2	36	1.51
40907--40931	10	2.5	10	100	0	50	44	12	12	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40959--41012	20	2.6	21	91	8	92	18	44	22	14	1.86
42155--42199	21	2.1	21	83	0	54	31	31	24	13	1.93
42224--42272	22	2.2	22	82	7	64	32	30	28	8	1.86
43737--43949	103	2.1	103	94	0	372	26	14	23	36	1.92
43966--44025	23	2.6	23	91	0	93	20	26	28	25	1.99
50564--50604	21	2.0	21	85	4	57	56	2	4	36	1.34
51309--51382	23	3.2	23	77	17	64	16	1	27	55	1.49
53119--53169	23	2.1	26	85	10	72	52	1	1	43	1.23
56368--56442	30	2.4	31	71	20	57	45	1	8	45	1.41
56338--56532	64	2.9	67	79	14	188	45	2	8	44	1.45
56335--56559	26	8.9	26	73	14	161	45	2	8	44	1.45
56661--56737	14	5.9	14	80	14	85	42	1	10	45	1.46
56867--56908	17	2.5	17	80	0	57	40	0	2	57	1.12
56824--56944	59	2.1	56	84	4	152	39	3	7	49	1.47
59634--59681	14	3.6	13	78	10	53	2	41	0	56	1.11
59639--59709	13	5.2	12	72	21	52	2	38	4	54	1.34
59927--60032	29	3.7	29	87	0	149	20	31	33	14	1.92
64601--64887	145	2.0	145	99	0	565	45	5	5	43	1.50
65658--66093	43	10.2	42	83	3	471	31	20	22	25	1.98

Tables:   1

The End!