genome.fa.s3375.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003375.1 Hibiscus syriacus cultivar Beakdansim tig00007095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90863

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5883--5940	30	1.9	30	96	0	107	31	18	6	43	1.77
6023--6058	6	6.0	6	93	0	54	44	0	5	50	1.25
7138--7327	40	4.8	40	82	7	183	40	23	15	21	1.91
7159--7327	60	2.8	60	84	7	218	40	24	14	20	1.90
7273--7325	19	2.7	19	91	5	79	35	24	13	26	1.92
7138--7331	20	9.7	20	76	11	150	40	23	15	21	1.91
7273--7345	19	3.7	20	85	7	69	38	23	10	27	1.88
8262--8332	24	3.0	24	89	0	106	22	16	19	40	1.91
10560--10595	18	2.0	18	94	0	63	55	25	2	16	1.55
10934--10987	20	2.7	20	85	0	72	22	18	20	38	1.93
11099--11148	25	2.0	25	96	0	91	26	8	22	44	1.80
11534--11570	18	2.1	18	89	0	56	32	5	10	51	1.60
12419--12451	13	2.5	13	100	0	66	21	9	18	51	1.73
12675--12784	50	2.2	51	90	6	179	53	17	1	27	1.54
14145--14243	21	4.7	21	72	8	85	22	20	33	24	1.97
14125--14218	42	2.2	42	85	7	120	19	21	36	23	1.95
14140--14243	42	2.5	42	80	10	122	22	19	34	24	1.96
16463--16502	20	2.0	20	85	0	53	15	12	22	50	1.77
16972--17143	40	4.3	40	79	12	185	20	18	24	36	1.95
16972--17143	60	2.9	60	88	5	224	20	18	24	36	1.95
16972--17110	20	6.9	20	82	9	185	20	18	24	36	1.95
16971--17142	20	8.6	20	77	17	112	19	18	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21765--21813	20	2.4	19	77	12	53	24	6	2	67	1.24
22178--22251	20	3.7	20	75	8	69	35	28	18	17	1.94
22218--22473	20	12.6	20	77	9	180	38	24	18	17	1.93
22239--22473	40	5.8	40	82	5	240	38	25	18	17	1.92
22218--22473	81	3.2	81	81	5	295	38	24	18	17	1.93
22239--22467	121	1.9	121	91	0	377	39	24	17	17	1.92
23034--23111	20	3.8	19	80	6	75	53	17	17	10	1.71
23049--23109	21	3.0	21	80	7	72	50	19	19	9	1.75
23123--23244	33	3.5	33	77	8	127	13	22	18	46	1.82
23189--23244	20	2.8	21	83	8	71	12	23	17	46	1.82
25265--25331	21	3.2	21	66	6	55	23	35	20	19	1.95
25213--25331	42	2.8	42	81	5	107	22	36	18	22	1.95
26676--26728	14	3.9	13	76	9	52	33	0	18	47	1.49
26816--26860	19	2.3	20	92	3	74	44	20	22	13	1.85
29143--29196	24	2.2	24	93	0	90	40	20	18	20	1.91
29143--29210	24	2.8	24	84	0	64	38	20	17	23	1.93
30056--30247	20	9.6	19	77	12	161	20	18	22	38	1.94
30053--30266	40	5.3	40	86	0	284	20	19	22	37	1.94
31689--32366	200	3.4	198	85	4	839	31	14	14	39	1.86
37025--37059	15	2.3	15	90	0	52	74	0	0	25	0.82
37665--37719	25	2.2	25	83	0	65	61	1	10	25	1.39
40190--40315	48	2.6	48	86	2	155	25	19	18	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40228--40329	48	2.1	48	85	0	132	27	20	17	34	1.95
40270--40515	114	2.1	114	94	0	429	25	21	21	31	1.98
44583--44650	35	1.9	35	85	5	93	26	25	17	30	1.97
45833--46172	112	3.0	112	98	0	653	24	15	19	40	1.90
48743--48778	19	1.9	18	88	5	54	13	19	5	61	1.52
49441--49664	43	5.2	43	93	0	351	27	20	27	25	1.99
54884--55369	42	11.9	42	74	9	357	32	17	20	29	1.95
54898--55376	164	2.9	164	87	1	683	33	17	19	29	1.95
54879--55120	122	2.0	121	82	7	292	32	16	20	29	1.95
55106--55371	122	2.2	122	79	6	288	33	18	19	28	1.96
58608--58638	12	2.6	12	100	0	62	29	9	6	54	1.57
60731--60781	20	2.5	21	84	9	70	70	0	7	21	1.12
60830--60871	17	2.4	18	88	4	59	73	0	4	21	1.01
63627--63653	2	13.5	2	100	0	54	48	0	0	51	1.00
63795--63835	2	20.5	2	100	0	82	48	0	0	51	1.00
65283--65314	2	16.0	2	100	0	64	0	50	0	50	1.00
71681--71773	30	3.1	31	66	19	79	38	5	24	31	1.78
78217--78249	14	2.4	14	95	5	59	45	0	3	51	1.16
78691--78736	18	2.6	17	86	3	56	32	8	26	32	1.87
79287--79352	28	2.4	28	97	0	123	43	36	7	12	1.70
81691--81751	32	1.9	32	90	6	97	31	13	29	26	1.93
82350--82383	17	2.0	17	100	0	68	23	23	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84423--84456	16	2.0	18	88	11	54	38	14	0	47	1.45
87040--87197	78	2.0	78	100	0	316	44	19	16	18	1.86
89747--89796	21	2.4	21	80	3	57	34	0	4	62	1.14
90128--90160	17	2.0	16	94	5	57	42	15	0	42	1.46

Tables:   1

The End!