genome.fa.s3377.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003377.1 Hibiscus syriacus cultivar Beakdansim tig00007097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84590

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4729--4841	59	1.9	59	81	3	138	41	14	9	34	1.78
8500--8552	23	2.4	22	80	3	61	60	1	1	35	1.19
9519--9543	13	1.9	13	100	0	50	24	0	8	68	1.16
10455--10530	16	4.8	16	91	0	125	31	17	11	39	1.85
15831--15866	12	2.9	12	91	4	54	66	2	0	30	1.06
22399--22435	2	18.5	2	100	0	74	48	0	0	51	1.00
22506--22538	11	2.8	12	90	9	59	24	0	6	69	1.10
24024--24121	21	4.7	21	81	7	110	40	23	15	20	1.90
24006--24097	41	2.2	41	80	3	105	39	23	15	21	1.92
23991--24122	62	2.1	61	84	6	169	38	21	15	23	1.92
24259--24301	22	2.0	21	86	8	61	16	41	18	23	1.89
24670--24772	20	5.2	20	79	2	100	20	18	22	38	1.93
24670--24772	39	2.6	40	79	3	109	20	18	22	38	1.93
24700--24782	20	4.2	19	78	4	58	15	16	22	44	1.86
26674--26742	20	3.5	20	81	0	75	36	26	20	17	1.94
26819--26849	14	2.2	14	94	0	53	9	19	19	51	1.74
26886--26928	19	2.2	20	91	4	70	13	13	23	48	1.79
28859--28970	27	3.7	27	69	22	89	28	1	17	51	1.56
28779--29022	63	3.6	66	85	10	241	29	3	16	51	1.60
28886--28999	36	3.4	36	68	22	111	27	3	15	53	1.58
28856--29022	63	2.5	65	93	5	275	28	2	17	51	1.60
29074--29127	20	2.7	20	80	5	65	44	27	16	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29170--29238	20	3.5	20	83	0	93	28	20	21	28	1.98
29255--29533	140	2.0	140	96	0	513	44	15	12	28	1.82
29656--29706	19	2.7	19	90	3	68	25	7	29	37	1.84
29664--29706	19	2.3	19	95	0	77	25	9	32	32	1.88
31681--31707	14	1.9	14	100	0	54	7	18	29	44	1.77
32911--32950	19	2.1	19	90	0	62	25	15	25	35	1.94
42140--42315	87	2.0	87	98	0	343	30	19	10	39	1.85
49465--49523	27	2.2	27	87	0	82	49	13	6	30	1.68
62938--62965	14	2.0	14	100	0	56	14	14	14	57	1.66
62925--62976	24	2.1	26	92	7	90	17	13	15	53	1.72
68296--68360	25	2.7	25	76	6	73	63	3	27	6	1.33
70403--70433	14	2.2	14	94	0	53	19	22	6	51	1.69
71598--71694	6	16.2	6	97	0	167	30	49	16	3	1.61
71692--71730	5	7.8	5	91	0	51	23	33	41	2	1.68
77595--77697	6	17.2	6	97	0	179	31	49	16	2	1.60
77695--77733	5	7.8	5	91	0	51	23	33	41	2	1.68
80898--80942	21	2.1	22	83	4	56	22	0	0	77	0.76
80901--80947	17	2.8	18	84	9	64	27	0	0	72	0.85
81053--81097	16	2.8	16	80	16	56	28	0	0	71	0.87
82978--83018	21	1.9	22	85	5	57	26	14	14	43	1.84

Tables:   1

The End!