genome.fa.s3378.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003378.1 Hibiscus syriacus cultivar Beakdansim tig00007099_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  195279

Tables:   1   

This is table  1  of  1  ( 105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9527--9574	24	2.0	24	100	0	96	16	29	20	33	1.95
21052--21090	20	2.0	20	94	0	69	43	5	25	25	1.75
21058--21102	20	2.6	16	80	19	54	46	4	22	26	1.70
22086--22129	22	2.0	22	100	0	88	27	18	13	40	1.88
23386--23438	21	2.5	21	81	6	72	20	26	18	33	1.96
23428--23517	20	4.4	21	73	9	78	36	17	22	23	1.95
23446--23540	41	2.3	41	94	0	145	35	18	22	23	1.96
23468--23537	20	3.5	20	69	11	61	34	20	21	24	1.97
23530--23596	21	3.2	21	80	4	82	20	22	17	38	1.93
23592--23703	20	5.6	20	84	6	120	38	19	20	21	1.94
24220--24286	19	3.5	19	83	2	80	49	25	14	10	1.76
24304--24369	33	2.0	34	87	3	98	10	24	22	42	1.85
24282--24394	19	6.1	19	76	13	110	12	23	19	45	1.84
26546--26606	21	2.9	21	72	0	68	22	36	19	21	1.95
27947--27982	14	2.6	14	95	0	63	30	0	25	44	1.54
28118--28202	19	4.7	19	77	14	99	15	20	20	44	1.86
28137--28200	33	1.9	33	93	0	110	17	20	20	42	1.90
30494--30531	15	2.5	15	100	0	76	5	21	21	52	1.66
30522--30546	12	2.1	12	100	0	50	0	28	0	72	0.86
31509--31562	21	2.5	22	81	3	65	38	18	22	20	1.93
31951--32004	14	3.5	14	75	22	54	12	20	18	48	1.81
31946--31997	14	3.2	16	75	24	63	11	23	19	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34029--34181	19	8.9	18	72	20	87	45	23	19	11	1.83
34087--34176	14	5.8	14	74	21	81	48	23	16	11	1.78
34070--34192	33	3.8	33	90	2	185	47	24	17	10	1.79
34070--34192	65	1.9	66	88	5	187	47	24	17	10	1.79
34210--34268	14	3.9	14	76	20	64	10	16	23	49	1.77
34193--34284	33	2.8	33	96	0	166	13	18	21	46	1.82
34188--34284	19	5.6	19	71	22	88	13	19	21	45	1.84
34269--34323	20	2.8	19	83	8	65	16	23	23	36	1.94
34805--34849	18	2.5	18	88	0	72	13	15	44	26	1.83
36132--36169	20	1.9	20	88	0	58	50	21	15	13	1.78
36433--36476	22	2.0	22	95	0	79	18	15	45	20	1.85
36665--36716	20	2.6	20	93	0	86	25	21	28	25	1.99
36725--36778	20	2.7	20	97	0	99	25	18	24	31	1.97
36644--36780	61	2.2	61	84	0	184	24	17	23	34	1.96
36807--36878	21	3.4	21	100	0	144	33	33	19	13	1.91
36870--36910	21	2.0	21	85	0	55	34	29	17	19	1.94
37398--37528	59	2.2	60	80	5	149	39	2	23	34	1.68
38527--38665	67	2.1	67	83	2	172	38	16	19	25	1.92
38542--38665	36	3.6	36	69	15	109	37	16	20	25	1.93
47065--47094	3	10.0	3	100	0	60	0	33	0	66	0.92
51504--51557	27	2.0	26	86	10	74	48	20	0	31	1.50
58210--58254	22	2.1	21	87	4	63	42	0	4	53	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63126--63172	22	2.2	21	92	3	76	42	0	4	53	1.20
68330--68371	3	13.3	3	85	9	57	61	0	2	35	1.09
78279--78362	18	4.7	19	75	12	79	48	10	8	32	1.68
78297--78365	35	2.0	35	91	0	111	49	10	7	33	1.64
78814--78879	21	3.1	21	80	8	80	27	30	22	19	1.98
92664--92776	55	2.1	55	100	0	226	36	13	12	38	1.82
101538--101646	47	2.3	47	95	0	191	43	17	24	14	1.87
104288--104373	29	3.0	29	82	3	93	19	38	27	13	1.90
106945--107054	48	2.3	48	93	1	186	42	17	24	15	1.88
113400--113442	23	1.9	22	90	4	68	72	4	0	23	1.04
118214--118266	20	2.7	20	78	0	61	32	22	11	33	1.90
118312--118392	20	4.0	20	84	9	110	33	27	11	28	1.91
118316--118408	41	2.3	41	90	1	143	34	25	10	29	1.90
118317--118428	20	5.7	19	81	10	100	33	24	10	32	1.89
118902--119050	64	2.3	64	90	0	226	51	16	2	30	1.58
120346--120404	21	2.8	21	73	0	55	23	20	37	18	1.94
120367--120439	21	3.5	21	83	5	85	21	20	35	21	1.96
120346--120468	42	2.9	42	81	0	138	25	17	34	21	1.96
122117--122194	39	2.0	39	97	0	147	42	15	10	32	1.80
122595--122633	20	2.0	20	84	0	51	20	12	17	48	1.80
123101--123138	20	2.0	20	84	5	51	44	13	15	26	1.83
123180--123250	20	3.6	20	74	9	65	25	14	30	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123204--123254	19	2.6	19	87	3	66	21	11	31	35	1.90
124843--124914	29	2.5	29	78	10	69	58	0	4	37	1.18
132114--132163	22	2.3	22	92	0	91	16	18	28	38	1.91
132862--132971	22	5.4	19	70	17	69	40	21	20	17	1.92
132862--132971	41	2.7	41	90	4	159	40	21	20	17	1.92
132876--132971	22	4.6	22	76	12	96	42	21	20	14	1.88
132915--132973	20	2.8	20	83	14	75	42	22	23	11	1.86
140102--140162	21	3.0	21	83	11	65	47	1	0	50	1.10
140102--140162	22	2.9	22	79	13	58	47	1	0	50	1.10
140443--140487	19	2.4	18	82	13	56	22	0	15	62	1.33
142620--142677	29	2.0	29	89	0	89	12	37	27	22	1.89
142720--142806	14	5.4	14	74	21	57	26	36	28	8	1.85
142734--142787	20	2.7	20	94	0	90	27	35	27	9	1.87
142734--142787	10	5.4	10	75	16	58	27	35	27	9	1.87
142881--142940	23	2.6	23	86	5	77	10	36	26	26	1.88
142944--142988	10	4.5	11	83	10	53	11	24	37	26	1.89
142952--142989	20	1.9	20	89	10	60	10	26	34	28	1.90
144332--144394	26	2.4	26	89	0	99	31	17	14	36	1.90
167594--167681	45	2.0	45	86	0	122	23	27	21	27	1.99
167824--167856	16	2.1	16	88	5	50	45	0	15	39	1.46
168458--168484	2	13.5	2	100	0	54	48	0	0	51	1.00
177777--177804	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
181573--181685	59	1.9	60	80	5	131	35	9	22	32	1.87
187227--187305	30	2.6	31	80	6	90	37	12	8	40	1.75
186649--187640	493	2.0	495	96	0	1853	31	16	15	36	1.90
188186--188343	21	7.8	20	72	7	86	38	25	17	18	1.92
188310--188519	20	10.5	20	81	4	217	36	24	19	19	1.95
189419--189443	12	2.1	12	100	0	50	72	0	28	0	0.86
191711--191911	33	5.9	34	77	16	195	45	18	21	13	1.85
191725--191889	19	9.4	19	74	19	171	46	18	20	14	1.84
191753--191911	52	3.0	52	95	0	291	45	17	22	14	1.85
191918--192021	52	2.0	52	94	3	183	14	24	18	43	1.87
191936--192013	19	4.4	18	78	18	92	14	23	17	44	1.85
192108--192165	14	4.4	13	77	10	55	50	20	0	29	1.49
194046--194159	19	6.6	19	73	20	97	45	23	20	10	1.82
194063--194154	33	2.8	33	95	1	168	46	21	20	10	1.81
194155--194283	19	7.3	19	72	20	109	9	17	27	46	1.78
194154--194246	33	2.8	34	85	11	122	9	18	25	46	1.79
194330--194878	91	6.1	93	92	7	927	46	19	12	21	1.82

Tables:   1

The End!