Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003379.1 Hibiscus syriacus cultivar Beakdansim tig00007102_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78349

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6317--6364
22
2.2
22
96
0
87
43
8
25
22
1.81
6325--6374
22
2.3
22
89
0
73
48
8
22
22
1.76
6996--7030
2
17.5
2
100
0
70
51
0
0
48
1.00
15000--15062
24
2.8
22
74
9
54
55
1
0
42
1.09
15651--15710
31
1.9
31
89
0
93
41
5
10
43
1.60
15734--16032
22
13.6
22
91
0
481
50
11
0
37
1.41
16019--16058
12
3.6
12
77
16
50
52
0
2
45
1.14
17824--17875
20
2.6
20
96
0
95
9
23
23
44
1.82
18512--18560
20
2.4
21
86
6
73
40
20
24
14
1.89
18563--18631
19
3.5
19
71
11
66
40
21
18
18
1.91
18581--18652
22
3.4
22
75
11
87
40
23
18
18
1.91
18563--18652
41
2.2
41
95
0
162
40
22
18
18
1.92
18643--18704
21
3.0
21
73
2
63
38
27
17
16
1.91
25298--25352
17
3.4
17
72
22
55
60
0
0
40
0.97
27827--27900
2
38.0
2
94
5
134
50
0
0
50
1.00
35161--35187
2
13.5
2
100
0
54
51
0
0
48
1.00
35371--36463
3
371.7
3
93
6
1920
33
0
0
66
0.92
42316--42382
29
2.4
27
82
7
71
43
5
5
44
1.53
42902--43074
59
2.9
58
79
10
154
47
5
15
31
1.68
45182--45206
13
1.9
13
100
0
50
16
8
12
64
1.49
49055--49093
2
19.5
2
100
0
78
51
0
0
48
1.00
49523--49640
60
2.0
60
83
3
148
38
13
11
36
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57013--57086
31
2.4
31
88
4
105
20
13
14
51
1.76
57798--57922
31
4.1
31
87
2
162
54
12
12
20
1.70
57798--57922
61
2.0
62
84
4
164
54
12
12
20
1.70
75066--75167
48
2.1
49
94
1
179
37
11
22
28
1.89
77703--78343
242
2.6
249
83
8
747
29
19
15
35
1.92

Tables:   1

The End!