genome.fa.s338.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000338.1 Hibiscus syriacus cultivar Beakdansim tig00000628_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98470

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7627--7781	30	5.0	29	69	19	89	30	20	3	45	1.66
7643--7772	67	1.9	67	93	0	224	29	20	3	46	1.68
7711--7782	29	2.4	30	79	6	85	27	23	5	43	1.76
10362--10438	37	2.1	37	85	9	104	48	1	2	48	1.23
10584--10621	20	1.9	20	88	0	58	21	26	10	42	1.85
11730--11770	22	1.9	21	90	5	64	70	4	0	24	1.06
22375--22417	20	2.2	20	86	0	59	39	0	4	55	1.20
23690--23748	3	19.7	3	100	0	118	32	0	0	67	0.91
25078--25118	13	3.1	13	82	6	55	34	0	2	63	1.08
25107--25153	21	2.2	21	77	7	51	36	2	0	61	1.08
25271--25308	2	19.5	2	94	5	69	50	0	0	50	1.00
26924--26961	20	1.9	20	88	0	58	21	26	10	42	1.85
37122--37159	18	2.1	18	95	0	67	31	7	5	55	1.51
38247--38292	23	2.0	22	84	12	58	52	6	23	17	1.68
38219--38800	122	4.7	122	87	4	771	40	14	18	26	1.89
40395--40433	13	2.9	13	88	7	60	33	0	2	64	1.08
40472--40869	149	2.7	145	79	7	385	39	6	8	46	1.58
40874--40917	21	2.0	23	86	8	65	52	0	2	45	1.13
40882--40916	15	2.4	14	90	4	52	51	0	2	45	1.16
40871--40917	23	2.1	22	84	11	60	51	0	2	46	1.13
41457--41488	2	16.0	2	100	0	64	50	0	0	50	1.00
42694--42721	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43235--43309	39	1.9	38	82	12	91	48	4	1	46	1.29
43575--43605	16	1.9	16	93	0	53	9	38	3	48	1.52
44509--44653	43	3.3	43	83	0	191	33	17	21	28	1.96
48481--48676	41	4.7	41	85	1	239	36	15	19	28	1.92
48480--48759	41	6.8	41	77	8	235	35	17	19	28	1.94
48481--48696	82	2.6	82	85	2	281	33	16	20	29	1.94
51108--51140	12	2.6	13	90	4	50	51	0	0	48	1.00
51194--51344	71	2.1	70	84	8	189	28	35	4	31	1.78
58546--58580	18	2.0	18	88	5	54	31	0	2	65	1.07
67898--67948	25	2.0	26	85	7	70	49	3	0	47	1.20
69234--69270	2	19.0	2	94	5	67	48	0	51	0	1.00
71161--71207	20	2.3	20	92	0	76	23	19	8	48	1.75
71174--71234	20	3.0	20	87	0	77	26	19	6	47	1.74
74842--74895	21	2.5	20	82	11	63	22	37	16	24	1.94
83434--83490	18	3.3	18	65	34	52	42	3	0	54	1.17
83438--83494	15	3.5	15	82	17	78	42	3	0	54	1.17
83438--83510	34	2.2	34	90	7	114	41	4	0	54	1.19
88275--88308	18	2.0	17	88	11	52	58	0	0	41	0.98
88944--88979	19	1.9	19	88	5	56	27	0	0	72	0.85
88964--89002	12	3.2	12	85	10	53	35	0	0	64	0.94
89470--89494	10	2.5	10	100	0	50	76	0	0	24	0.80
91033--91147	59	1.9	59	87	1	167	33	11	15	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91690--91749	22	2.7	22	78	17	61	48	8	3	40	1.50
91761--92137	146	2.5	150	79	13	389	35	15	8	40	1.77
91895--92134	78	3.1	76	78	7	261	34	17	10	38	1.83
92561--92601	15	2.7	15	88	3	55	56	2	0	41	1.13
93113--93154	22	1.9	22	100	0	84	47	14	2	35	1.57
93115--93163	22	2.2	22	85	3	62	53	14	2	30	1.52
93135--93252	32	3.7	32	97	0	227	52	12	0	34	1.40
93158--93242	14	5.5	14	67	20	53	55	8	0	36	1.30
93140--93228	18	5.4	18	65	20	68	53	12	0	33	1.38
93262--93317	22	2.5	22	97	0	103	51	12	0	35	1.40
93081--93390	166	1.9	161	87	9	457	51	12	0	34	1.43
93333--93401	22	3.5	22	68	25	71	49	10	0	40	1.37
93298--93418	37	3.4	36	86	8	160	49	7	0	42	1.30
93389--93493	15	7.0	15	92	2	167	47	0	0	52	1.00

Tables:   1

The End!