genome.fa.s3381.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003381.1 Hibiscus syriacus cultivar Beakdansim tig00007116_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66642

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2943--3002	26	2.3	26	97	2	113	58	21	5	15	1.56
3256--3458	82	2.5	82	82	6	216	34	15	18	31	1.92
3300--3481	41	4.5	41	82	4	217	35	15	18	30	1.92
3299--3458	82	2.0	82	88	3	243	34	15	19	31	1.92
3332--3499	81	2.1	83	81	7	193	32	15	16	35	1.90
4822--5081	133	1.9	134	88	0	387	32	15	18	34	1.92
5019--5151	41	3.2	42	76	11	114	28	15	21	34	1.94
13248--13319	21	3.4	21	88	0	108	48	23	26	1	1.59
13686--13851	43	3.9	42	79	7	138	38	22	16	22	1.93
13739--13890	43	3.6	43	80	1	126	36	24	15	23	1.93
13800--13980	43	4.2	43	82	2	168	33	25	13	27	1.94
19538--19642	45	2.3	46	88	1	149	35	16	17	31	1.92
19678--19726	19	2.6	19	84	9	57	24	30	18	26	1.98
25516--25595	24	3.5	22	78	14	92	22	26	23	27	2.00
28225--28263	19	2.1	19	95	0	69	20	38	15	25	1.92
28160--28324	64	2.5	65	83	4	181	32	24	16	26	1.96
28341--28389	19	2.6	19	84	9	57	24	30	18	26	1.98
28210--28388	64	2.8	62	77	13	168	29	26	16	26	1.97
30164--32737	4	645.0	4	99	0	5106	24	25	0	50	1.50
32749--32778	14	2.1	14	100	0	60	50	13	0	36	1.42
33979--34024	12	3.6	12	81	16	56	45	17	19	17	1.85
33985--34025	12	3.1	13	80	19	57	46	14	17	21	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36315--36354	21	1.9	21	94	0	71	30	15	7	47	1.72
36349--36480	33	4.0	33	95	1	203	34	6	14	44	1.72
36466--36520	13	4.2	13	75	13	58	34	3	12	49	1.59
36716--36772	21	2.7	21	91	0	96	19	26	26	28	1.99
36938--36993	15	3.6	15	74	9	58	32	10	12	44	1.77
37084--37115	16	2.0	17	88	11	50	43	21	21	12	1.86
37976--38275	150	2.0	150	98	0	573	40	17	17	25	1.90
40585--40666	38	2.2	38	84	6	114	14	9	32	42	1.79
41500--41536	11	3.2	11	92	7	56	45	16	2	35	1.61
54352--54420	29	2.4	29	85	4	95	27	23	10	39	1.87
56395--56437	21	2.0	21	95	0	77	46	0	13	39	1.44
60147--60192	23	2.0	23	86	0	65	13	15	10	60	1.58
61301--61354	17	3.2	16	80	19	65	70	1	1	25	1.07
61302--61348	24	2.0	24	83	8	60	72	2	2	23	1.06

Tables:   1

The End!