genome.fa.s3382.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003382.1 Hibiscus syriacus cultivar Beakdansim tig00007117_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149125

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4501--4531	15	2.1	15	100	0	62	19	12	32	35	1.90
10978--11042	30	2.2	29	79	17	73	50	1	3	44	1.26
13941--13986	24	1.9	24	90	0	74	63	4	0	32	1.14
14619--14651	2	16.5	2	100	0	66	51	0	0	48	1.00
15458--15498	22	1.9	21	85	5	55	39	2	0	58	1.11
15950--15980	14	2.3	13	94	5	53	32	0	6	61	1.21
16872--16914	17	2.4	18	92	3	70	60	0	0	39	0.97
20838--20891	28	1.9	28	88	0	81	53	16	11	18	1.72
22625--22684	29	2.1	29	83	0	75	41	10	10	38	1.72
22780--22875	28	3.3	28	74	8	84	39	7	10	42	1.67
23234--23279	17	2.7	17	100	0	92	58	0	0	41	0.98
23585--23644	20	3.0	20	100	0	120	30	30	20	20	1.97
26796--26855	20	3.0	20	100	0	120	30	30	20	20	1.97
31054--31097	2	22.0	2	100	0	88	50	0	0	50	1.00
33212--33236	13	1.9	13	100	0	50	32	0	32	36	1.58
37118--37168	23	2.2	23	78	0	57	25	23	25	25	2.00
38879--38960	29	2.9	28	85	5	110	52	9	7	30	1.61
39739--39823	20	4.2	20	73	5	64	35	24	11	28	1.91
40227--40454	20	11.2	20	75	13	182	42	21	19	16	1.88
40303--40445	42	3.5	42	89	3	236	39	23	20	16	1.92
40550--40636	6	14.5	6	100	0	174	33	50	16	0	1.45
41142--41179	6	6.5	6	96	3	69	0	15	52	31	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41275--41582	60	5.1	60	78	13	319	15	19	22	41	1.89
41282--41582	40	7.4	40	84	9	314	15	19	23	41	1.90
41275--41582	20	15.2	20	76	15	260	15	19	22	41	1.89
49145--49220	3	25.7	3	94	2	136	64	0	0	35	0.94
49388--49527	39	3.5	38	72	19	133	21	21	12	45	1.84
49380--49529	81	1.9	81	94	0	264	22	21	12	44	1.85
49614--50197	136	4.3	136	91	0	895	25	22	18	33	1.96
51070--51157	8	10.5	8	72	22	65	11	15	1	71	1.20
51084--51124	13	3.2	13	87	12	59	12	14	0	73	1.11
51071--51109	5	8.6	5	78	21	50	15	15	0	69	1.20
51071--51136	18	3.8	18	82	13	84	13	16	0	69	1.19
51071--51136	17	3.8	17	84	13	73	13	16	0	69	1.19
51061--51142	18	4.9	16	78	14	60	10	18	0	70	1.15
69284--69312	3	9.7	3	100	0	58	34	0	0	65	0.93
90080--90120	8	4.7	9	79	14	50	58	0	0	41	0.98
90412--90464	24	2.2	24	86	3	72	13	26	15	45	1.82
96054--96083	3	10.0	3	92	0	51	30	0	3	66	1.07
103527--103664	66	2.1	66	88	0	204	27	14	21	36	1.92
113637--113667	16	1.9	16	93	0	53	48	16	3	32	1.62
115661--115732	35	2.1	35	100	0	144	40	11	20	27	1.87
116106--116145	18	2.3	18	83	8	57	25	5	2	67	1.23
116672--116863	42	4.5	41	86	5	242	32	24	24	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116672--116863	84	2.2	84	87	7	271	32	24	24	18	1.97
117759--117789	12	2.6	12	100	0	62	29	9	25	35	1.88
117945--117985	18	2.3	18	91	0	64	21	19	36	21	1.95
117911--117972	26	2.4	26	69	12	65	20	22	38	17	1.93
117920--117962	13	3.3	13	100	0	86	18	23	41	16	1.89
118842--118903	2	31.0	2	100	0	124	50	0	0	50	1.00
118958--118988	2	15.5	2	100	0	62	48	0	0	51	1.00
119330--119381	9	5.6	9	78	15	52	17	7	0	75	1.03
119330--119381	14	3.7	14	82	12	54	17	7	0	75	1.03
123031--123068	20	1.9	20	88	0	58	13	26	36	23	1.91
129596--129710	59	1.9	60	86	8	164	33	23	4	38	1.75
140524--140552	12	2.4	12	100	0	58	44	0	0	55	0.99
141300--141371	2	36.0	2	100	0	144	50	0	0	50	1.00
143761--143816	20	2.7	22	75	22	59	14	16	1	67	1.31

Tables:   1

The End!