genome.fa.s3386.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003386.1 Hibiscus syriacus cultivar Beakdansim tig00007128_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155280

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527--604	28	2.5	31	78	16	90	53	8	6	30	1.57
1358--1408	22	2.3	22	89	0	75	9	31	29	29	1.89
1552--1606	3	18.3	3	78	14	60	60	0	0	40	0.97
3758--4187	213	2.0	213	94	0	754	43	15	24	16	1.86
9862--9919	31	1.9	31	85	3	82	36	10	17	36	1.84
12792--12823	11	2.9	11	95	0	55	78	0	0	21	0.76
17496--17533	20	1.9	20	88	0	58	21	26	10	42	1.85
22467--22593	24	5.5	24	77	12	106	19	11	15	53	1.71
22493--22528	18	1.9	19	94	5	65	25	8	11	55	1.62
22520--22593	12	6.2	12	70	9	53	18	12	17	51	1.76
25492--25740	124	2.0	124	97	0	471	44	18	4	32	1.70
31394--31445	23	2.3	23	96	0	95	30	21	11	36	1.89
35602--35682	30	2.7	30	82	3	92	43	6	18	32	1.75
35868--36816	475	2.0	475	96	0	1754	33	9	17	40	1.82
37349--37427	9	8.8	9	80	0	86	29	5	20	45	1.72
37349--37417	27	2.6	27	88	0	102	30	5	20	43	1.75
38468--38746	31	9.1	31	91	2	456	26	18	20	33	1.96
43626--43690	30	2.2	31	80	8	80	36	18	6	38	1.76
43906--44094	31	6.1	31	89	0	279	25	17	20	35	1.94
46731--46889	40	4.0	40	97	0	300	23	17	25	32	1.97
46997--47151	44	3.5	45	83	2	188	38	9	20	31	1.85
48688--49595	329	2.8	329	98	0	1771	36	11	17	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54516--54637	40	3.0	40	90	0	199	25	15	24	34	1.95
54742--54895	44	3.5	45	80	7	172	39	9	18	32	1.82
58500--58538	19	2.0	20	85	5	53	33	23	7	35	1.83
59047--59072	13	2.0	13	100	0	52	23	0	0	76	0.78
63412--63489	22	3.5	22	91	3	113	42	12	15	29	1.84
63712--63774	22	2.9	22	78	4	65	34	14	7	42	1.75
64326--64362	14	2.6	14	100	0	74	13	13	13	59	1.62
64282--64351	24	2.9	24	70	8	61	17	12	17	52	1.74
66634--66709	33	2.3	34	84	8	95	30	0	5	64	1.15
66665--66742	34	2.4	31	83	10	86	38	0	2	58	1.12
66883--66936	17	3.2	17	72	0	54	31	0	3	64	1.11
68518--68590	21	3.5	21	88	7	112	19	34	26	20	1.96
69110--69206	32	3.0	33	83	6	135	53	4	3	39	1.36
69606--70103	128	3.9	128	97	0	948	32	19	25	22	1.98
70174--70214	8	5.2	8	82	5	57	36	29	0	34	1.58
75463--75501	17	2.3	17	86	8	53	41	0	12	46	1.42
75824--75861	19	2.0	19	85	10	51	78	0	2	18	0.86
75949--75973	2	12.5	2	100	0	50	52	0	0	48	1.00
77067--77104	14	2.5	15	87	8	51	76	2	0	21	0.91
77093--77122	8	3.8	8	95	0	51	86	10	0	3	0.67
77117--77481	38	9.7	36	81	12	389	48	4	2	44	1.36
77116--77477	153	2.4	152	89	4	536	49	4	2	43	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77116--77571	153	3.0	154	84	8	531	48	5	2	43	1.41
78151--78854	85	8.3	85	88	0	969	24	18	22	34	1.96
78106--78854	341	2.2	340	88	1	1074	24	18	22	34	1.96
85221--85296	16	4.9	15	70	13	64	77	1	1	19	0.91
85250--85297	7	6.3	7	84	15	60	77	2	0	20	0.88
85292--85631	38	8.9	37	77	14	336	48	4	3	43	1.40
85292--85629	76	4.4	74	84	9	439	48	4	3	43	1.40
85621--85649	2	14.5	2	100	0	58	48	0	0	51	1.00
85578--85685	56	1.9	55	87	5	155	49	3	1	45	1.30
85502--85770	131	2.1	129	83	8	334	47	4	3	43	1.42
103037--103078	20	2.0	21	95	4	77	14	23	45	16	1.84
106546--106585	19	2.0	20	95	4	73	15	25	42	17	1.88
106882--106921	20	2.0	20	90	4	64	55	7	0	37	1.29
109711--109735	2	12.5	2	100	0	50	52	0	0	48	1.00
109976--110057	3	27.3	3	87	4	112	37	0	2	59	1.11
110788--110816	13	2.2	13	100	0	58	0	31	62	6	1.22
112257--112293	15	2.7	15	88	12	53	24	5	8	62	1.44
116932--116961	13	2.3	13	94	0	51	80	3	16	0	0.85
119023--119211	92	2.1	92	95	0	342	28	15	21	34	1.94
121240--121348	54	2.1	54	89	3	168	41	18	19	21	1.91
122423--123794	76	18.0	76	97	0	2539	22	21	20	35	1.96
123950--124022	3	24.3	3	86	5	94	38	0	2	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124758--124782	13	1.9	13	100	0	50	0	32	60	8	1.26
127445--127496	26	2.0	26	88	0	77	32	36	9	21	1.86
129721--129783	31	2.0	32	87	9	94	38	0	6	55	1.25
132933--133004	20	3.6	20	96	0	135	9	23	22	44	1.82
133142--133174	17	1.9	17	93	0	57	30	48	21	0	1.50
133138--133174	6	6.3	6	90	6	58	32	48	18	0	1.49
133662--133721	6	10.5	6	90	1	81	3	18	43	35	1.67
136168--136219	27	2.0	27	88	3	79	34	13	19	32	1.90
137815--138027	36	5.9	36	89	4	331	36	20	24	18	1.95
137810--138027	72	3.0	72	97	0	409	37	20	24	17	1.94
141662--141707	10	4.7	10	86	5	58	76	2	21	0	0.90
141983--142024	18	2.3	19	84	16	61	47	0	4	47	1.23
142005--142062	29	1.9	31	86	6	84	39	0	5	55	1.22
142493--142560	35	1.9	35	85	5	93	33	7	16	42	1.76
143045--143089	14	3.1	15	81	15	58	37	0	0	62	0.96
143790--143958	81	2.1	79	88	2	248	36	15	8	39	1.77
143991--144177	95	2.0	94	86	5	261	39	14	9	37	1.78
143679--144378	247	2.8	239	78	11	671	40	15	8	36	1.76
143872--144281	166	2.5	160	86	4	547	39	15	7	37	1.75
144086--144242	67	2.4	66	84	4	192	40	13	8	38	1.74
143872--144335	159	2.9	161	81	5	519	40	15	7	37	1.75
144150--144372	93	2.4	92	89	2	349	40	16	8	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148939--148978	20	2.0	21	85	5	55	55	0	0	45	0.99
148939--148995	21	2.8	21	81	7	55	47	0	1	50	1.11
150663--150698	18	2.0	18	88	0	54	22	33	11	33	1.89

Tables:   1

The End!