genome.fa.s3387.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003387.1 Hibiscus syriacus cultivar Beakdansim tig00007129_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119994

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4696--4766	20	3.6	20	92	3	126	9	23	22	43	1.83
4902--4934	17	1.9	17	93	0	57	30	48	21	0	1.50
4898--4934	6	6.3	6	90	6	58	32	48	18	0	1.49
5416--5474	6	10.5	6	87	5	72	3	18	44	33	1.67
5434--5474	17	2.3	18	87	8	66	2	17	48	31	1.60
5416--5474	23	2.7	23	86	5	77	3	18	44	33	1.67
5434--5481	23	2.1	23	84	0	60	8	16	45	29	1.76
7880--7930	27	1.9	27	88	4	77	35	9	19	35	1.85
9518--9730	36	5.9	36	89	4	331	36	20	24	18	1.95
9513--9730	72	3.0	72	97	0	409	37	20	24	17	1.94
9780--9830	26	2.0	26	84	7	68	35	11	19	33	1.88
13342--13385	10	4.7	10	86	13	58	75	2	22	0	0.92
13657--13698	18	2.3	19	84	16	61	47	0	4	47	1.23
13679--13736	29	1.9	31	86	6	84	39	0	5	55	1.22
14711--14764	3	18.7	3	84	7	76	37	0	0	62	0.95
15466--15634	81	2.1	79	88	2	248	36	15	8	39	1.77
15667--15853	95	2.0	94	86	5	261	39	14	9	37	1.78
15355--16056	247	2.8	239	78	11	680	40	15	7	36	1.76
15762--15920	67	2.4	68	86	2	205	40	13	8	38	1.74
15545--15959	166	2.5	163	85	5	561	39	14	7	37	1.75
15545--16013	161	2.9	162	81	5	554	40	15	7	37	1.75
15826--16050	94	2.4	94	90	0	371	40	16	8	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20652--20709	21	2.8	21	78	14	57	50	0	1	48	1.11
22399--22434	18	2.0	18	88	0	54	22	33	11	33	1.89
32107--32159	20	2.6	21	84	3	72	47	5	22	24	1.73
40330--40405	30	2.5	30	82	0	89	50	10	6	32	1.63
41011--41041	13	2.4	13	100	0	62	51	0	0	48	1.00
42763--42864	34	2.9	36	89	8	156	43	13	13	29	1.83
43255--43297	18	2.5	17	85	7	61	25	4	2	67	1.22
43555--43602	25	1.9	25	83	8	62	20	2	2	75	1.02
43726--43805	40	2.0	40	86	9	112	31	5	8	55	1.52
43862--43940	29	2.7	29	96	4	140	15	12	0	72	1.13
43869--43922	13	3.9	13	75	13	54	18	7	0	74	1.05
46952--46999	16	2.9	17	82	17	50	77	8	14	0	0.99
46961--47013	19	2.9	17	78	13	54	77	7	13	1	1.06
48100--48135	18	2.0	18	88	0	54	22	5	30	41	1.76
48515--48583	36	1.9	36	81	0	84	31	14	11	42	1.82
48563--48684	36	3.4	36	75	8	106	24	20	15	39	1.91
48700--48962	36	7.4	36	77	9	245	28	19	12	39	1.88
48615--49025	138	3.0	137	84	1	534	28	19	12	38	1.89
48742--48926	102	1.8	102	85	2	264	29	17	12	40	1.87
48920--49093	68	2.6	68	83	4	212	33	21	9	36	1.85
49698--50254	105	5.3	105	89	4	768	33	25	18	22	1.97
50801--50936	37	3.8	35	82	9	150	42	13	13	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51293--51335	18	2.5	17	85	7	61	25	4	2	67	1.22
51378--51409	3	11.0	3	93	6	57	31	0	0	68	0.90
51407--51441	2	17.5	2	100	0	70	48	0	0	51	1.00
54175--54241	31	2.2	31	83	0	80	26	25	5	41	1.78
70967--71036	21	3.3	21	68	7	70	7	1	34	57	1.35
70962--71056	42	2.3	42	98	0	181	6	2	29	62	1.32
70962--71081	42	2.9	42	90	5	154	8	5	29	57	1.49
75460--75602	70	2.0	70	94	0	250	26	13	25	34	1.94
75541--75705	43	3.8	43	75	3	116	21	15	26	35	1.94
75701--75857	44	3.6	44	86	4	214	29	17	18	34	1.94
76173--76243	21	3.4	21	75	7	56	4	36	15	43	1.66
80441--80475	16	2.1	17	94	5	63	31	8	25	34	1.86
81225--81257	15	2.1	16	88	5	50	51	15	24	9	1.72
80678--81896	609	2.0	609	100	0	2438	31	21	23	22	1.98
81834--81866	15	2.1	16	88	5	50	51	15	24	9	1.72
92817--92881	29	2.2	29	91	0	103	49	15	10	24	1.76
93280--93332	19	2.8	19	72	16	56	50	0	1	47	1.12
98001--98076	29	2.7	27	80	11	82	23	13	2	60	1.45
101107--101165	32	1.9	31	93	6	102	38	0	8	52	1.32
101112--101181	31	2.2	32	87	2	97	45	0	7	47	1.30
101410--101475	25	2.5	27	76	14	66	42	1	4	51	1.31
102859--102929	28	2.4	30	81	11	85	56	7	0	36	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104127--104171	23	2.0	23	86	0	63	26	24	26	22	2.00
104397--104455	29	2.3	27	83	16	72	37	15	10	37	1.81
113625--113670	19	2.4	19	100	0	92	36	28	15	19	1.92
116740--116932	104	2.0	96	88	11	284	31	12	17	38	1.87
118633--118667	17	2.1	17	88	0	52	68	0	25	5	1.11
119788--119826	18	2.2	18	95	0	69	33	20	5	41	1.74

Tables:   1

The End!