genome.fa.s3388.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003388.1 Hibiscus syriacus cultivar Beakdansim tig00007132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126354

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656--791	18	7.5	18	73	13	93	44	20	22	12	1.85
656--795	36	3.9	34	76	16	113	45	20	22	12	1.84
731--821	30	2.9	31	87	11	123	43	19	24	12	1.85
672--819	18	8.6	18	68	19	57	45	19	22	12	1.83
826--862	18	2.1	18	94	0	65	13	16	24	45	1.83
835--925	31	2.8	33	87	11	136	13	23	19	43	1.86
1027--1063	14	2.6	14	82	0	56	45	24	0	29	1.53
2401--2481	21	3.9	21	69	6	65	24	22	32	20	1.98
2997--3093	42	2.3	42	96	0	176	18	14	36	30	1.91
4378--4429	20	2.6	20	87	0	86	40	23	23	13	1.89
4369--4491	33	3.5	35	79	11	137	44	19	22	13	1.85
4511--4566	21	2.7	21	81	8	53	14	19	17	48	1.81
4539--4589	20	2.5	20	90	0	75	13	13	21	50	1.76
5147--5339	20	9.6	20	79	6	219	18	19	25	37	1.94
5149--5339	40	4.7	40	93	1	319	18	18	25	37	1.93
5348--5400	20	2.7	20	88	5	72	15	18	22	43	1.87
5146--5400	121	2.1	121	86	4	363	18	18	24	38	1.93
5429--5503	20	3.7	20	75	12	64	20	20	25	34	1.96
6049--6079	16	1.9	16	93	0	53	61	22	9	6	1.50
6147--6177	14	2.2	14	94	0	53	58	25	12	3	1.50
6466--6526	10	6.3	10	70	14	56	57	11	14	16	1.65
6465--6544	24	3.3	24	82	3	90	56	13	13	16	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6476--6541	14	5.0	14	78	14	77	56	13	15	15	1.69
6468--6541	38	1.9	38	94	0	130	56	13	13	16	1.67
10898--11057	85	1.9	85	92	0	266	46	18	13	21	1.84
12303--12361	27	2.1	29	81	6	68	33	10	13	42	1.78
13052--13106	3	18.3	3	100	0	110	32	0	67	0	0.91
13386--13440	12	4.4	13	78	15	62	63	0	0	36	0.95
13723--13766	13	3.5	13	90	6	72	18	52	15	13	1.75
13864--13918	24	2.3	24	93	0	92	25	45	14	14	1.83
13864--13918	12	4.6	12	76	0	56	25	45	14	14	1.83
27397--27495	24	4.2	24	70	12	78	47	17	13	22	1.81
29984--30022	7	5.3	7	82	11	51	25	23	35	15	1.94
29983--30022	15	2.7	15	92	0	71	25	22	37	15	1.93
29964--30038	8	9.5	8	76	19	70	22	22	37	17	1.94
30006--30079	18	4.2	18	75	21	77	14	21	45	17	1.84
30012--30079	31	2.2	31	94	0	118	13	22	47	17	1.82
30012--30043	13	2.5	13	100	0	64	12	25	46	15	1.81
30038--30073	13	2.8	13	86	0	54	13	19	47	19	1.83
32168--32267	24	4.2	24	70	10	78	48	17	12	23	1.80
32161--32269	48	2.3	48	80	0	137	49	16	11	22	1.78
34787--34823	13	2.8	13	83	0	56	13	21	45	18	1.84
34774--34828	18	3.3	18	71	23	66	12	21	47	18	1.82
34733--34787	8	6.5	8	85	12	67	23	23	36	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34766--34828	31	2.2	27	83	13	74	14	22	46	17	1.84
41667--41725	21	2.8	21	86	0	82	25	25	27	22	2.00
42169--42194	13	2.0	13	100	0	52	30	0	23	46	1.53
46210--46310	52	1.9	54	85	4	143	21	27	14	35	1.93
46670--46725	24	2.3	24	96	0	103	10	44	10	33	1.74
46803--46906	3	34.7	3	92	0	172	35	1	0	62	1.06
46817--46928	9	11.7	10	84	9	60	38	1	0	59	1.08
47413--47450	17	2.3	16	83	16	51	76	7	13	2	1.11
48356--48399	20	2.1	21	87	4	63	36	2	2	59	1.23
59760--59812	13	3.9	13	88	11	72	84	0	15	0	0.61
59755--59802	16	3.0	16	93	6	80	81	0	18	0	0.70
59767--59812	11	3.8	11	86	13	56	86	0	13	0	0.56
60965--61261	52	5.7	52	100	0	594	22	15	24	37	1.93
61897--62442	113	4.8	113	89	2	839	37	13	19	28	1.90
61897--62442	227	2.4	226	92	1	893	37	13	19	28	1.90
62691--62788	3	32.7	3	91	0	160	35	2	0	62	1.07
63289--63326	17	2.3	16	83	16	51	76	7	13	2	1.11
64230--64270	20	2.0	21	85	4	57	36	2	2	58	1.24
70379--70419	5	8.2	5	88	0	55	0	34	0	65	0.93
70379--70419	15	2.7	15	92	0	64	0	34	0	65	0.93
70376--70418	10	4.4	10	91	2	61	0	30	0	69	0.88
72156--72213	2	29.5	2	96	3	109	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72225--72320	48	2.0	48	97	0	183	27	16	5	51	1.66
73391--73435	18	2.5	18	85	0	63	42	15	20	22	1.89
76981--77022	18	2.3	18	79	0	57	35	11	11	40	1.79
78739--78763	3	8.3	3	100	0	50	0	0	32	68	0.90
95296--95385	2	45.0	2	92	0	144	50	1	3	45	1.25
105147--105239	40	2.3	40	81	7	100	27	24	17	30	1.97
105229--105329	20	5.4	20	80	15	135	39	15	19	24	1.91
105273--105300	13	2.2	13	100	0	56	42	7	21	28	1.79
105253--105320	33	2.1	33	94	0	118	42	13	19	25	1.87
105321--105473	20	7.7	20	88	1	191	29	23	20	26	1.99
105351--105466	59	2.0	60	87	1	171	29	24	20	25	1.99
106056--106164	20	5.4	20	83	6	139	24	19	26	29	1.98
106056--106165	41	2.7	41	85	4	143	24	19	26	30	1.98
115081--117389	179	12.9	181	95	3	4202	29	18	12	39	1.88
115081--117389	533	4.3	538	96	2	4307	29	18	12	39	1.88
118733--118817	44	1.9	44	90	0	134	32	18	17	30	1.95
118844--118967	41	3.1	42	71	11	107	33	19	19	27	1.96
120222--120264	22	2.0	22	85	0	59	37	18	0	44	1.50
124709--124829	54	2.3	54	88	2	174	32	26	19	22	1.97

Tables:   1

The End!