Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003389.1 Hibiscus syriacus cultivar Beakdansim tig00007134_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60461

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
257--533
40
6.6
41
75
14
219
22
20
24
32
1.98
317--374
27
2.1
28
96
3
109
24
20
25
29
1.99
257--494
61
3.8
61
85
10
327
22
20
24
32
1.97
384--533
81
1.8
82
91
1
248
20
20
26
32
1.97
257--515
21
12.3
21
74
14
230
22
20
25
32
1.98
764--942
65
2.8
65
92
0
295
31
18
10
39
1.85
986--1070
19
4.2
19
78
17
82
30
29
5
34
1.81
995--1075
44
1.9
40
87
9
117
33
29
6
30
1.82
995--1075
41
1.9
41
85
9
110
33
29
6
30
1.82
1944--2416
181
2.6
180
90
2
716
42
12
15
29
1.83
4087--4134
19
2.6
19
86
3
62
29
4
10
56
1.52
4276--4787
202
2.6
197
90
5
823
35
16
15
31
1.91
4276--4877
202
3.0
193
86
7
764
35
16
15
32
1.91
5178--5206
15
1.9
15
100
0
58
20
48
0
31
1.50
5179--5214
15
2.4
15
90
0
54
19
41
2
36
1.66
7582--7634
24
2.2
24
89
0
79
37
1
13
47
1.54
8057--8081
12
2.1
12
100
0
50
52
16
8
24
1.70
8080--8914
197
4.2
200
83
5
936
38
16
12
31
1.86
8475--8520
21
2.1
21
84
4
56
30
15
10
43
1.81
8672--8717
21
2.1
21
84
4
56
30
15
10
43
1.81
12071--12549
198
2.4
198
82
5
567
38
14
15
31
1.88
21995--22051
24
2.4
23
75
13
62
26
12
10
50
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33764--33789
8
3.2
8
100
0
52
53
11
11
23
1.69
36406--36441
15
2.4
15
100
0
72
44
11
0
44
1.39
39731--39755
13
1.9
13
100
0
50
28
16
16
40
1.89
47228--47301
19
3.8
20
75
18
84
58
6
8
27
1.52
47227--47334
39
2.7
38
85
7
135
56
6
10
26
1.57
47235--47295
17
3.3
17
68
27
52
57
8
8
26
1.56
50482--50524
20
2.2
20
87
8
61
48
4
0
46
1.22
50511--50547
9
4.3
9
80
13
51
56
0
0
43
0.99
58161--58231
20
3.6
20
81
9
92
39
30
7
22
1.81
58262--58307
20
2.3
20
88
0
65
41
21
15
21
1.90
58879--58929
20
2.5
21
83
6
68
19
9
19
50
1.75

Tables:   1

The End!