Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003390.1 Hibiscus syriacus cultivar Beakdansim tig00007135_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66302

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4314--4343
2
15.0
2
100
0
60
50
0
0
50
1.00
20871--20909
20
2.0
20
89
0
60
33
7
17
41
1.79
20891--20995
32
3.6
32
66
24
95
31
5
13
49
1.65
20923--20965
21
2.0
22
90
4
70
34
4
13
46
1.65
20870--21018
53
2.8
52
93
5
255
32
6
13
48
1.67
20975--21019
20
2.3
19
88
7
72
35
4
11
48
1.59
25584--25622
20
2.0
20
94
0
69
35
5
17
41
1.72
25636--25675
20
2.0
21
85
14
57
35
5
12
47
1.63
25583--25731
53
2.8
53
94
2
266
32
5
12
48
1.64
25689--25732
20
2.2
20
91
0
70
36
4
11
47
1.60
28458--28517
29
2.1
29
100
0
120
26
11
10
51
1.69
29959--30002
21
2.1
21
91
0
70
50
6
6
36
1.56
30523--30604
44
1.9
41
85
7
110
30
4
30
34
1.79
30525--30615
19
4.4
20
75
17
96
34
4
29
31
1.77
30990--31040
23
2.2
23
82
6
59
47
1
13
37
1.55
36126--36287
55
3.0
54
85
2
207
19
23
24
32
1.97
39119--39191
24
3.0
24
97
0
137
26
38
19
16
1.92
39230--39341
32
3.5
32
76
0
107
42
16
12
27
1.85
39214--39340
64
2.0
64
84
0
164
41
17
12
28
1.86
41035--41177
71
2.0
71
88
0
214
32
14
20
31
1.93
41726--41776
3
17.0
3
78
15
52
68
1
27
1
1.11
41717--41763
12
3.7
12
83
13
58
72
2
25
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41717--41776
21
2.9
21
84
0
84
70
3
25
1
1.12
58265--58324
19
3.1
19
71
20
52
38
1
3
56
1.26
59284--59335
18
2.9
18
71
21
54
53
13
3
28
1.57
60631--60689
22
2.6
21
75
21
50
76
3
5
15
1.10
60982--61013
15
2.1
15
94
0
55
68
0
0
31
0.90
63629--63690
32
2.0
31
81
9
72
51
9
8
30
1.63
65324--65383
2
30.5
2
93
3
104
50
0
50
0
1.00

Tables:   1

The End!