genome.fa.s3391.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003391.1 Hibiscus syriacus cultivar Beakdansim tig00007137_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  193384

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3731--3849	62	1.9	62	84	3	159	34	17	21	26	1.95
8559--8696	54	2.6	54	87	2	188	27	28	18	25	1.98
9110--9185	24	3.2	23	71	23	68	22	26	22	28	1.99
15947--16087	54	2.6	54	87	2	203	26	29	18	24	1.98
16488--16576	23	3.8	24	75	20	98	20	25	25	28	1.99
17869--18114	123	2.0	123	99	0	483	40	17	8	33	1.80
19799--19823	2	12.5	2	100	0	50	52	0	0	48	1.00
20274--20310	2	18.5	2	100	0	74	0	48	0	51	1.00
25583--25616	17	2.0	17	94	0	59	20	0	2	76	0.92
29235--29316	34	2.4	34	87	0	128	43	0	0	56	0.99
30935--31113	6	30.2	6	95	2	299	31	15	34	18	1.93
32314--32425	29	3.9	29	98	0	215	19	44	27	8	1.79
32432--32541	30	3.7	30	90	0	184	23	47	18	10	1.80
33158--33201	21	2.1	21	91	0	70	29	0	15	54	1.42
33178--33232	28	2.0	28	96	0	101	29	0	12	58	1.35
36307--36454	21	7.3	21	63	14	69	40	0	14	44	1.46
36351--36498	11	12.6	11	69	20	52	39	0	14	45	1.46
36298--36790	60	8.2	61	94	3	851	39	0	14	45	1.46
36618--36667	21	2.3	22	80	10	59	40	0	8	52	1.31
36759--36856	25	4.0	25	77	17	114	37	0	14	47	1.44
36808--36855	14	3.6	14	81	16	66	35	0	16	47	1.47
36721--36839	49	2.4	50	91	2	188	39	0	12	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36301--36792	239	2.1	239	92	3	787	40	0	14	45	1.46
36928--36954	7	3.9	7	100	0	54	55	14	14	14	1.70
36950--37087	26	5.5	26	74	14	103	44	2	10	42	1.50
36950--37168	98	2.2	98	96	1	404	43	1	10	44	1.48
37021--37168	26	5.9	26	73	12	121	43	2	9	45	1.48
37130--37221	24	3.8	24	73	9	80	43	2	4	50	1.34
37129--37224	11	7.9	12	75	14	81	43	2	4	50	1.33
37181--37230	24	2.1	24	81	7	57	48	2	4	46	1.32
37310--37350	14	3.1	14	76	20	52	36	7	9	46	1.65
39515--39545	15	2.1	14	94	5	53	54	6	0	38	1.26
39520--39566	16	3.0	16	84	9	53	59	10	0	29	1.31
39602--39683	34	2.5	34	84	9	100	48	12	0	39	1.41
39664--39716	12	4.3	12	84	11	63	52	16	0	30	1.44
39743--39849	46	2.3	47	80	15	118	49	11	0	39	1.39
39816--39904	41	2.2	40	78	8	90	46	10	1	42	1.45
39940--39978	16	2.3	18	86	8	55	56	5	0	38	1.22
40190--40295	49	2.2	47	90	9	162	23	18	36	20	1.95
40201--40296	49	2.0	47	93	6	165	23	18	38	18	1.93
40339--40390	17	3.4	17	65	25	51	26	30	28	13	1.94
40340--40428	29	3.1	29	95	0	151	23	32	29	14	1.94
40416--40463	24	2.0	24	91	0	78	8	31	27	33	1.86
42745--42982	101	2.4	101	95	0	422	33	15	11	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45444--45483	15	2.7	15	100	0	80	40	0	5	55	1.22
45903--45977	29	2.5	30	89	6	109	45	4	24	26	1.71
46144--46178	17	1.9	19	88	11	56	34	2	11	51	1.53
46891--46916	5	5.2	5	100	0	52	0	19	57	23	1.40
49548--49584	19	2.1	18	90	10	58	37	10	5	45	1.62
49758--49835	35	2.2	35	95	0	147	37	25	20	16	1.93
51906--51942	12	3.1	12	100	0	74	51	8	0	40	1.32
54932--54996	19	3.4	19	79	8	71	44	1	1	52	1.19
55679--55735	23	2.5	23	82	0	60	59	14	12	14	1.61
58685--58738	2	28.0	2	92	7	94	50	0	0	50	1.00
60118--60284	54	3.1	54	87	1	246	37	16	16	29	1.91
62288--62331	23	1.9	23	81	9	54	40	2	13	43	1.57
66493--66665	60	2.9	60	84	1	195	30	17	5	46	1.71
68332--68377	22	2.0	23	87	4	67	52	2	0	45	1.13
68952--69003	20	2.5	22	78	12	65	53	1	3	40	1.30
70394--70428	2	17.5	2	100	0	70	51	0	0	48	1.00
74428--74542	59	1.9	60	84	5	153	35	22	4	37	1.74
78811--78948	60	2.3	58	74	8	134	34	21	4	39	1.73
80662--80687	3	8.7	3	100	0	52	0	30	0	69	0.89
86823--86870	19	2.5	19	75	0	51	75	4	6	14	1.16
88528--88687	27	5.9	27	83	0	176	28	26	9	36	1.87
106842--107688	231	3.7	231	88	2	1163	42	15	12	29	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108256--108334	24	3.3	24	77	11	74	27	11	16	44	1.82
108288--108354	24	2.8	24	80	6	75	23	10	17	47	1.79
108256--108375	23	5.1	23	78	6	89	26	11	15	45	1.81
108604--108650	12	3.9	12	77	0	58	42	21	14	21	1.88
108592--108653	24	2.6	24	84	5	81	43	17	14	24	1.86
108873--108957	34	2.5	34	88	1	118	43	7	7	42	1.59
111320--111397	39	2.0	39	100	0	156	20	28	15	35	1.93
116160--116191	15	2.2	15	94	5	57	50	0	0	50	1.00
116387--116430	22	2.0	22	100	0	88	36	9	13	40	1.76
124699--124764	28	2.3	29	84	12	91	45	6	0	48	1.27
124746--124856	2	55.0	2	76	15	68	49	4	0	45	1.22
124726--124893	61	2.7	61	78	13	168	46	7	0	46	1.30
124718--124948	127	1.8	124	81	14	285	46	8	0	45	1.33
124858--124909	17	3.1	17	89	10	81	40	11	0	48	1.40
124889--124953	31	2.1	31	82	5	78	44	10	0	44	1.39
125313--125646	45	7.5	46	66	11	158	29	19	19	31	1.97
125270--125647	133	2.8	132	82	1	432	30	19	19	30	1.97
127283--127354	32	2.2	32	87	0	99	0	15	0	84	0.62
127283--127354	11	6.8	10	84	7	81	0	15	0	84	0.62
127295--127342	1	48.0	1	78	0	51	0	10	0	89	0.48
127335--127384	21	2.4	21	80	6	57	10	16	2	72	1.21
129789--129848	28	2.1	29	81	9	70	60	5	20	15	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130393--130491	31	3.2	31	85	2	137	39	9	7	44	1.63
132661--132714	24	2.0	28	83	16	71	29	5	3	61	1.36
134084--134127	19	2.4	19	80	3	54	25	25	6	43	1.79
136199--136310	59	1.9	59	94	3	199	27	25	7	39	1.82
140376--140427	27	2.1	24	83	16	63	17	17	13	51	1.76
142061--142100	21	2.0	20	90	5	62	50	0	0	50	1.00
147866--147904	18	2.2	18	100	0	78	33	17	20	28	1.96
148437--148495	30	2.0	30	89	0	91	32	1	6	59	1.34
160391--160487	20	5.1	20	80	8	121	26	29	20	22	1.99
160391--160484	38	2.5	38	87	3	136	26	30	20	22	1.98
161564--161601	20	1.9	20	88	0	58	28	21	18	31	1.97
161609--161764	64	2.5	62	81	6	168	26	23	18	31	1.98
171197--171264	31	2.2	31	86	2	93	27	13	13	45	1.80
176285--176385	45	2.2	45	100	0	202	35	16	17	29	1.93
178539--178606	31	2.2	31	86	2	93	27	13	13	45	1.80
184810--184848	18	2.0	18	85	14	51	46	0	0	53	1.00
184874--184927	27	2.1	25	86	6	72	44	3	0	51	1.19
184930--184973	18	2.6	16	82	10	61	31	2	2	63	1.19
184913--184968	26	2.2	26	81	12	62	32	1	1	64	1.14
185615--185663	24	2.1	24	92	3	82	42	18	18	20	1.89
185618--185670	24	2.3	23	86	3	70	43	16	20	18	1.88
185664--185762	23	4.3	23	90	0	153	33	24	27	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187222--187291	3	23.3	3	100	0	140	34	0	0	65	0.93
191984--192259	40	6.8	40	73	4	178	29	21	17	31	1.96

Tables:   1

The End!