genome.fa.s3392.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003392.1 Hibiscus syriacus cultivar Beakdansim tig00007138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89965

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3336--4030	198	3.5	196	84	5	793	30	12	16	40	1.86
4083--4107	12	2.1	12	100	0	50	24	8	16	52	1.70
4540--4591	24	2.2	24	82	6	61	51	11	3	32	1.56
6932--6960	15	1.9	15	100	0	58	31	0	48	20	1.50
7348--7849	200	2.6	197	89	6	756	31	15	16	36	1.91
7989--8034	19	2.5	18	82	6	56	58	10	4	26	1.50
9710--10180	179	2.6	180	91	4	745	28	16	12	42	1.85
11046--11127	44	1.9	41	87	7	119	31	6	29	32	1.82
11048--11138	19	4.4	20	76	17	105	35	5	28	30	1.80
11183--11358	65	2.7	65	92	0	289	39	11	18	30	1.86
11607--11786	21	8.8	21	82	4	224	32	27	20	20	1.97
11592--11789	82	2.4	82	96	0	360	33	26	20	19	1.97
11607--11872	61	4.5	62	80	11	270	32	26	20	20	1.97
11736--11842	53	2.0	53	98	0	205	35	22	21	20	1.96
11824--11872	21	2.3	21	92	0	80	30	28	20	20	1.98
14589--14613	12	2.1	12	100	0	50	80	0	20	0	0.72
21767--21814	14	3.5	14	74	5	53	22	16	10	50	1.76
21763--21816	27	2.0	27	96	0	99	20	18	11	50	1.77
26853--26953	35	2.9	35	95	0	184	43	18	10	26	1.83
32909--32971	31	2.0	32	87	3	92	36	11	17	34	1.85
33369--33437	24	2.9	25	79	18	76	52	2	1	43	1.25
33506--33550	16	2.9	16	80	12	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34081--34123	18	2.5	17	84	3	59	41	0	0	58	0.98
34654--34704	23	2.2	23	85	0	66	31	19	9	39	1.84
34664--34713	23	2.2	23	88	0	73	32	16	12	40	1.84
34646--34856	86	2.4	87	88	2	318	31	12	11	44	1.77
34827--34900	23	3.2	23	96	0	130	32	20	8	39	1.82
34827--34909	23	3.6	23	91	0	121	32	18	8	40	1.80
34741--34996	110	2.3	110	89	0	370	32	12	10	43	1.77
34850--35096	87	2.8	86	88	2	377	34	12	9	43	1.75
34937--34996	23	2.6	23	83	0	75	36	13	8	41	1.74
50311--50354	14	3.1	14	87	9	54	65	4	2	27	1.23
50317--50358	17	2.5	17	80	3	50	69	2	2	26	1.13
51513--52343	105	8.0	105	89	4	1201	22	18	26	33	1.96
51513--52374	204	4.2	206	89	4	1218	22	18	26	33	1.97
51513--52330	309	2.6	307	90	5	1236	22	18	26	33	1.97
53099--53169	22	3.2	22	87	0	106	29	12	22	35	1.91
53828--53878	15	3.3	15	76	15	50	0	13	7	78	0.96
53823--53882	31	2.0	31	87	9	88	0	13	6	80	0.91
57133--57184	24	2.1	25	82	3	61	75	1	3	19	1.06
59608--59679	6	11.8	6	74	12	51	63	2	1	31	1.17
65577--65907	165	2.0	165	98	1	646	27	18	15	38	1.91
67894--67976	41	2.0	41	86	2	114	34	19	10	34	1.87
71610--71651	22	1.9	22	85	0	57	54	2	2	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82420--82453	14	2.3	15	95	5	61	47	8	38	5	1.59
84299--84480	59	3.0	60	74	8	167	41	3	20	34	1.69
85528--85734	104	2.0	104	86	0	288	32	16	16	33	1.92
86233--86275	22	2.0	21	82	13	52	53	4	0	41	1.21

Tables:   1

The End!