genome.fa.s3393.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003393.1 Hibiscus syriacus cultivar Beakdansim tig00007139_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134960

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1857--1886	12	2.5	12	100	0	60	23	33	6	36	1.81
7788--7843	21	2.8	21	83	8	71	44	0	1	53	1.11
7942--8021	30	2.5	31	80	11	83	50	2	0	47	1.14
7958--8004	23	2.0	23	84	8	60	48	0	0	51	1.00
7944--8015	31	2.3	31	83	9	85	48	2	0	48	1.16
8386--8444	14	4.1	14	76	4	64	35	18	5	40	1.73
8337--8447	35	3.3	35	75	13	99	42	15	4	37	1.67
8385--8441	29	2.0	29	92	0	96	33	19	3	43	1.68
8473--8533	32	1.9	32	86	0	86	37	4	11	45	1.62
9094--9144	24	2.2	22	82	6	57	17	9	5	66	1.40
10517--10575	30	2.0	29	83	6	75	40	8	13	37	1.75
13288--13454	86	1.9	86	95	0	298	34	17	15	31	1.92
14685--14725	13	3.2	12	86	10	55	48	0	0	51	1.00
24201--24246	14	3.1	14	87	6	65	52	19	15	13	1.75
26665--26705	20	2.1	20	90	4	66	58	17	0	24	1.38
26684--26778	37	2.6	36	79	9	113	55	13	7	23	1.63
27825--27877	27	2.0	27	96	0	97	20	20	11	47	1.81
30702--30784	41	2.0	41	100	0	166	31	14	24	30	1.94
32039--33111	78	13.8	78	91	0	1626	26	32	18	22	1.97
39702--39743	16	2.5	17	76	7	50	33	7	38	21	1.81
51174--51239	31	2.1	31	94	0	114	43	7	4	43	1.53
51497--51574	24	3.2	24	72	12	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51520--51611	33	2.9	32	78	13	100	45	0	0	54	0.99
51531--51611	11	7.6	11	68	21	57	46	0	0	53	1.00
51520--51611	32	2.9	32	80	13	102	45	0	0	54	0.99
51514--51578	15	4.1	16	73	23	57	47	0	0	52	1.00
51558--51626	32	2.2	31	82	12	79	52	1	0	46	1.09
53351--53398	21	2.3	21	89	3	71	25	10	10	54	1.66
55084--55115	6	5.3	6	100	0	64	50	15	34	0	1.45
58585--58611	9	3.0	9	100	0	54	22	33	0	44	1.53
60078--60108	15	2.1	15	93	0	53	35	9	0	54	1.33
64594--64626	16	2.1	16	100	0	66	45	6	18	30	1.73
68719--68830	29	3.8	29	93	1	179	40	11	14	33	1.82
72196--72225	15	2.0	15	93	0	51	20	0	23	56	1.42
73491--73573	29	2.8	29	92	1	139	40	12	14	32	1.83
76852--76952	29	3.4	29	78	6	105	39	6	11	41	1.69
77854--77893	16	2.4	16	87	8	53	22	0	5	72	1.04
82468--82513	21	2.2	21	88	0	65	50	21	15	13	1.78
82596--82656	26	2.3	26	94	0	113	45	18	14	21	1.84
82804--82874	20	3.3	21	82	11	74	53	16	15	14	1.73
82823--82874	21	2.5	21	90	3	79	51	19	15	13	1.75
83165--83258	5	18.8	5	100	0	188	59	0	0	40	0.97
84023--84065	2	21.5	2	100	0	86	51	0	0	48	1.00
85219--85247	13	2.2	13	100	0	58	62	6	6	24	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86268--86332	19	3.2	21	73	22	59	72	1	1	24	1.02
86587--86629	18	2.5	16	81	7	50	67	4	4	23	1.28
86986--87090	37	2.8	37	85	0	138	29	14	14	41	1.85
87633--88262	105	6.0	105	89	3	889	21	17	26	34	1.95
87633--88262	209	3.0	211	89	2	900	21	17	26	34	1.95
88462--88537	36	2.1	36	85	0	98	40	15	19	23	1.90
88437--88754	104	3.1	104	89	4	450	37	11	20	30	1.88
88657--88731	39	1.9	39	83	5	98	37	13	22	26	1.91
93605--93655	22	2.4	22	80	9	61	72	0	7	19	1.08
94224--94266	18	2.5	17	85	7	61	67	2	4	25	1.22
96282--96326	19	2.3	20	92	3	74	51	0	2	46	1.13
99458--99565	53	2.0	53	92	7	184	46	13	12	26	1.80
114469--114516	13	3.5	14	77	11	55	39	0	0	60	0.97
114461--114507	18	2.6	18	83	6	60	40	0	0	59	0.97
115773--115829	27	2.1	28	83	9	73	38	33	7	21	1.80
118734--118794	32	1.9	32	86	0	86	19	24	34	21	1.96
119218--119262	16	2.9	15	86	6	63	31	4	24	40	1.75
119218--119264	8	5.9	8	80	9	51	31	4	25	38	1.75
119345--119791	83	5.4	83	76	2	339	35	14	17	31	1.91
119350--119791	166	2.7	163	76	7	410	35	14	17	31	1.91
119748--119833	41	2.2	39	83	8	102	46	11	16	25	1.80
120664--120714	26	1.9	26	88	4	75	54	21	1	21	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
123843--123903	19	3.2	20	77	13	58	54	3	0	42	1.17
124045--124088	16	2.6	17	82	10	56	72	2	0	25	0.96
124102--124148	16	3.1	15	79	11	51	70	2	2	25	1.10
124659--124699	21	2.0	21	90	0	64	41	7	2	48	1.44
127035--127069	18	1.9	18	88	0	52	51	2	2	42	1.31
127157--127195	19	2.1	19	85	9	53	53	0	2	43	1.14

Tables:   1

The End!