genome.fa.s3394.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003394.1 Hibiscus syriacus cultivar Beakdansim tig00007140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51327

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242--4291	19	2.5	20	87	3	66	36	32	12	20	1.89
4304--4351	20	2.4	20	82	10	62	29	25	18	27	1.98
6451--6547	42	2.3	42	100	0	194	30	34	16	18	1.93
6728--6802	21	3.6	21	67	17	57	22	12	34	30	1.91
7092--7129	21	1.9	19	85	15	51	31	31	10	26	1.90
7097--7167	21	3.4	21	80	7	81	26	35	15	22	1.94
7066--7188	42	2.9	42	80	2	140	23	35	15	25	1.94
7118--7188	21	3.4	21	80	0	79	22	36	18	22	1.95
8536--8561	13	2.0	13	100	0	52	23	0	15	61	1.33
8494--8598	50	2.1	50	89	0	156	27	2	15	54	1.55
8917--8956	16	2.5	16	83	0	53	67	0	5	27	1.11
9093--9140	18	2.6	18	83	6	60	37	10	22	29	1.88
9133--9188	20	2.8	20	94	0	94	28	14	28	28	1.95
14047--14089	23	1.9	22	90	4	68	23	0	4	72	1.04
20432--20541	47	2.3	48	92	1	177	13	24	18	43	1.86
32235--32327	18	5.3	18	77	10	93	29	8	13	48	1.73
32233--32326	35	2.7	35	85	6	129	28	8	13	48	1.72
32231--32338	53	2.1	51	82	8	128	33	9	12	45	1.73
35126--35166	21	2.0	21	100	0	82	34	29	4	31	1.79
35323--35466	71	2.0	71	91	2	236	19	22	20	38	1.94
35323--35461	35	3.9	35	85	3	190	20	22	20	36	1.95
36567--36607	21	2.0	21	100	0	82	34	29	4	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37710--37899	66	2.9	66	76	6	188	27	21	16	34	1.95
42537--42576	12	3.3	12	85	0	53	72	7	0	20	1.08
43761--43824	2	32.0	2	100	0	128	50	0	0	50	1.00
44529--44570	3	13.3	3	85	9	57	35	2	0	61	1.09

Tables:   1

The End!