genome.fa.s3395.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003395.1 Hibiscus syriacus cultivar Beakdansim tig00007142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97828

Tables:   1   

This is table  1  of  1  ( 66 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
925--990	3	22.0	3	79	11	55	56	0	0	43	0.99
925--989	30	2.2	30	86	5	87	55	0	0	44	0.99
5609--5644	10	3.3	11	88	11	56	83	0	2	13	0.76
7403--7516	42	2.7	42	84	9	137	30	22	20	26	1.98
7662--7793	42	3.2	41	78	5	131	31	20	20	27	1.97
7401--8219	277	2.9	278	89	3	1179	34	20	15	29	1.94
7989--8070	42	2.0	42	87	4	121	32	24	20	21	1.98
9499--9600	28	3.6	28	87	0	141	19	4	33	42	1.73
10240--10337	9	10.9	9	75	19	64	7	18	1	73	1.12
10240--10289	19	2.5	20	80	3	57	6	24	0	70	1.10
10219--10359	73	1.9	73	87	9	207	5	18	0	75	1.04
10263--10359	18	5.3	18	73	20	62	5	16	1	77	1.00
10218--10375	62	2.5	60	80	12	160	6	17	1	75	1.08
10243--10358	10	12.6	9	71	24	50	6	18	0	75	1.06
10243--10359	9	12.5	10	71	21	53	5	17	0	75	1.06
13580--13641	30	2.1	29	90	3	97	62	14	9	12	1.53
13592--13655	29	2.2	30	85	2	85	64	12	7	15	1.49
13649--13756	29	3.6	30	78	7	94	54	5	13	25	1.61
13592--13756	60	2.8	61	73	13	144	58	8	12	21	1.60
14513--14577	3	21.7	3	96	0	121	66	0	1	32	1.01
14866--15131	130	2.0	131	85	5	362	25	17	31	25	1.97
15198--15256	30	1.9	32	89	6	95	38	13	18	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15201--15275	31	2.5	30	81	14	75	38	14	20	26	1.91
15559--15622	32	2.0	32	87	0	92	29	29	14	26	1.95
21370--21579	30	7.0	31	75	8	114	57	9	12	20	1.63
25594--25915	37	8.8	37	72	12	168	45	4	7	43	1.51
25632--25915	72	3.9	72	77	9	265	45	4	6	43	1.50
25594--25917	73	4.4	73	75	11	263	45	4	7	43	1.51
25705--25946	72	3.3	69	78	11	234	45	3	6	44	1.47
26025--26099	31	2.6	27	78	19	71	28	2	1	68	1.12
26780--26815	4	9.0	4	100	0	72	25	0	0	75	0.81
26954--26990	8	4.6	8	87	12	58	10	0	0	89	0.49
26954--26984	9	3.6	9	95	4	55	9	0	0	90	0.46
26954--26990	16	2.2	16	95	4	65	10	0	0	89	0.49
27883--27988	42	2.5	42	80	11	110	43	2	4	49	1.38
28095--28141	22	2.1	22	92	0	76	31	25	27	14	1.95
28700--28726	5	5.4	5	100	0	54	18	0	0	81	0.69
29046--29075	13	2.3	13	94	0	51	30	0	0	70	0.88
30655--30690	14	2.6	14	81	0	54	16	11	2	69	1.29
31441--31839	112	3.6	112	92	1	649	47	13	14	25	1.80
31737--31931	92	2.1	91	93	0	327	48	13	14	24	1.79
31865--32502	182	3.5	182	92	0	1026	44	13	15	26	1.84
34368--34468	49	2.0	50	84	5	134	34	15	13	35	1.88
36411--36487	32	2.4	32	88	0	118	25	15	15	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41645--41691	23	2.0	23	100	0	94	34	12	25	27	1.92
45975--46557	134	4.4	134	82	3	568	29	14	22	33	1.93
54489--54854	131	2.8	131	77	4	398	40	15	10	33	1.82
56730--56780	3	17.3	3	91	4	86	64	0	1	33	1.05
60261--60288	6	4.7	6	100	0	56	46	0	0	53	1.00
60747--60905	21	7.7	20	75	14	146	20	20	25	34	1.96
60767--60905	42	3.4	42	92	2	228	20	20	25	34	1.96
61000--61047	6	8.5	6	97	2	75	29	54	16	0	1.43
61509--61551	18	2.4	18	84	0	59	0	18	37	44	1.50
61644--61818	40	4.3	41	91	4	282	36	22	20	21	1.96
61644--61818	82	2.1	82	95	0	314	36	22	20	21	1.96
61641--61818	21	8.7	20	70	13	121	35	22	20	21	1.96
61819--61868	21	2.4	21	89	0	82	20	22	28	30	1.98
66551--66593	20	2.2	20	82	0	50	30	11	11	46	1.76
66630--66673	21	2.1	21	83	8	54	43	6	6	43	1.57
70197--70445	124	2.0	124	100	0	498	30	21	15	32	1.94
74171--74210	21	1.9	21	89	0	62	55	10	12	22	1.67
78342--78379	20	1.9	20	84	10	51	39	13	21	26	1.89
79458--79989	264	2.0	265	99	0	1057	28	20	20	30	1.98
80636--80696	3	21.0	3	77	12	65	27	3	1	67	1.16
94281--94328	1	48.0	1	89	0	69	93	0	4	2	0.39
95854--95908	3	19.0	3	76	14	53	27	3	1	67	1.17

Tables:   1

The End!