genome.fa.s3397.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003397.1 Hibiscus syriacus cultivar Beakdansim tig00007145_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156516

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9769--10195	213	2.0	213	93	0	728	17	25	14	43	1.86
12352--12408	3	19.3	3	85	3	71	42	0	0	57	0.98
12367--12419	26	2.0	26	85	7	72	45	0	0	54	0.99
12557--12609	22	2.4	22	93	0	88	24	32	30	13	1.93
13727--13800	17	4.1	17	71	25	55	25	4	4	66	1.27
13783--13825	15	3.1	14	83	6	52	30	0	2	67	1.03
14191--14218	2	14.0	2	100	0	56	50	0	0	50	1.00
19568--19601	10	3.5	10	88	4	52	82	0	17	0	0.67
19568--19609	18	2.3	18	91	4	66	78	0	21	0	0.75
19578--19609	9	3.6	9	91	0	55	75	0	25	0	0.81
24066--24110	22	2.0	22	100	0	90	35	15	13	35	1.87
24788--26982	45	49.6	45	88	3	3317	24	23	19	33	1.97
26462--26532	20	3.3	20	65	24	54	22	28	19	29	1.98
26644--26706	20	3.2	20	65	24	51	15	26	23	33	1.95
26761--26920	80	2.0	80	91	0	257	27	22	16	33	1.95
27137--27216	3	27.0	3	92	2	135	36	0	0	63	0.94
28577--28635	17	3.4	17	73	15	57	23	1	3	71	1.11
28618--28660	15	3.1	14	83	6	52	30	0	2	67	1.03
31005--31046	21	2.0	21	95	0	75	64	0	7	28	1.20
31525--31587	33	1.9	33	90	0	99	41	14	12	31	1.83
33117--33147	16	1.9	16	100	0	62	51	25	6	16	1.68
35898--36053	78	2.0	78	98	0	303	30	3	26	39	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40404--40452	24	2.0	24	100	0	98	32	12	12	42	1.79
40578--40623	22	2.1	23	84	8	60	39	6	13	41	1.70
41119--41144	13	2.0	13	100	0	52	30	7	7	53	1.57
43840--43870	8	3.9	8	100	0	62	90	0	9	0	0.46
43839--43901	28	2.2	28	82	0	81	84	0	12	3	0.75
44612--44679	22	3.0	22	78	4	73	47	16	16	20	1.83
45460--45515	21	2.7	21	94	0	94	26	23	21	28	1.99
48565--48613	24	2.0	24	100	0	98	42	12	12	32	1.79
52738--52774	16	2.3	16	95	0	65	29	32	21	16	1.95
53553--53580	13	2.2	13	100	0	56	53	10	21	14	1.70
57427--57533	13	7.3	13	74	21	79	15	44	22	16	1.86
57440--57512	18	4.3	18	76	16	93	16	47	21	13	1.81
57423--57518	31	3.1	31	93	0	174	16	47	20	14	1.82
57494--57540	15	3.3	14	88	5	60	17	38	23	21	1.93
58830--58864	18	1.9	18	88	0	52	54	0	17	28	1.43
62642--62748	13	7.3	13	74	21	79	15	44	22	16	1.86
62655--62727	18	4.3	18	76	16	93	16	47	21	13	1.81
62638--62733	31	3.1	31	93	0	174	16	47	20	14	1.82
62709--62755	15	3.3	14	88	5	60	17	38	23	21	1.93
64044--64078	18	1.9	18	88	0	52	54	0	17	28	1.43
68370--68686	158	2.0	158	99	0	625	39	16	21	23	1.92
72786--72838	21	2.5	22	82	8	58	56	15	9	18	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73051--73105	21	2.6	21	79	2	65	56	10	0	32	1.34
86332--86533	42	4.8	42	88	1	307	19	19	25	35	1.96
93692--93900	42	5.0	42	88	0	319	18	20	23	37	1.94
93692--93939	84	2.9	84	88	1	352	18	22	22	36	1.95
98476--98596	35	3.5	35	87	0	170	35	22	23	19	1.96
98476--98620	70	2.1	70	89	0	218	33	21	22	22	1.97
98476--98620	35	4.1	34	81	8	157	33	21	22	22	1.97
106962--106991	2	15.0	2	100	0	60	0	50	0	50	1.00
110497--110547	21	2.4	21	93	0	84	23	23	17	35	1.95
110537--110649	20	5.7	20	93	0	190	38	20	20	20	1.93
110537--110667	20	6.6	20	91	1	165	37	21	20	20	1.95
110845--110910	22	3.0	22	90	0	105	24	39	15	21	1.91
111261--111312	20	2.6	20	84	0	68	19	17	26	36	1.94
111300--111343	20	2.2	20	84	8	54	15	13	20	50	1.78
113218--113400	20	9.5	20	81	10	175	39	19	17	22	1.92
113447--113553	20	5.3	20	94	0	169	20	19	21	38	1.94
115531--115566	14	2.6	14	90	0	54	30	0	22	47	1.52
115762--115834	33	2.4	29	77	18	85	13	21	20	43	1.86
115792--115892	20	5.5	19	71	18	70	16	21	19	41	1.90
115779--115850	33	2.2	33	94	0	126	15	23	19	41	1.89
118326--118377	24	2.2	24	82	0	59	36	21	19	23	1.95
119204--119290	20	4.3	20	94	0	147	24	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119277--119413	20	6.8	20	86	1	184	20	20	20	38	1.93
119297--119436	41	3.4	41	91	1	201	22	21	17	37	1.94
119279--119443	61	2.7	61	75	4	163	21	21	18	38	1.94
119449--119493	21	2.1	21	83	0	54	44	15	22	17	1.86
121715--121785	19	3.6	19	76	14	63	49	1	0	49	1.09
121744--121785	18	2.2	19	87	8	59	54	0	0	45	0.99
122409--122513	42	2.5	42	85	3	149	26	14	29	29	1.95
127050--127089	21	2.0	19	85	9	53	45	15	0	40	1.46
127846--127926	32	2.7	30	84	9	103	33	14	16	35	1.89
130666--130865	58	3.4	58	76	8	197	37	9	22	31	1.86
130666--131075	59	7.0	59	72	11	277	36	10	23	30	1.88
130660--131031	59	6.3	59	72	9	278	35	10	23	31	1.88
130667--131075	118	3.5	116	85	3	482	36	10	22	30	1.88
137510--137830	58	5.5	59	75	8	287	37	10	22	29	1.88
137502--137830	118	2.8	117	90	1	496	36	10	22	29	1.89
137502--137944	118	3.8	114	82	6	451	36	11	23	29	1.89
137502--137944	235	1.9	236	80	6	515	36	11	23	29	1.89
138463--138507	22	2.0	22	86	4	63	17	24	24	33	1.96
148163--148337	90	2.0	89	93	1	296	45	5	10	37	1.63
151767--151796	15	2.0	15	93	0	51	43	0	0	56	0.99
153370--153420	16	3.3	16	89	5	79	11	9	17	60	1.57
154719--154790	28	2.5	29	79	2	74	38	11	11	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156126--156228	38	2.6	39	87	12	156	50	8	11	29	1.68

Tables:   1

The End!