genome.fa.s3399.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003399.1 Hibiscus syriacus cultivar Beakdansim tig00007152_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77027

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6585--6628	21	2.1	21	82	0	52	9	43	15	31	1.79
12952--13194	116	2.1	111	82	9	278	39	11	7	41	1.69
12819--13194	58	6.5	58	71	12	222	41	10	8	39	1.70
14192--14225	13	2.6	13	85	0	50	44	17	23	14	1.86
14224--14267	13	3.4	13	80	0	52	18	18	43	20	1.89
15021--15140	57	2.1	58	81	7	138	43	11	9	35	1.73
15446--15551	44	2.4	45	80	3	124	42	14	6	36	1.71
16169--16194	6	4.3	6	100	0	52	84	0	15	0	0.62
19578--19655	32	2.4	32	91	0	111	37	21	8	32	1.85
30551--30650	36	2.8	36	83	11	109	73	2	9	16	1.18
30594--30653	27	2.2	28	81	3	77	73	0	8	18	1.08
30599--30652	12	4.2	12	73	13	54	74	0	5	20	1.02
31871--31939	21	3.2	21	82	12	70	68	0	2	28	1.04
31885--31949	3	21.3	3	75	20	55	66	0	1	32	1.01
31901--31944	7	6.6	7	92	2	65	63	0	0	36	0.95
31922--32033	39	3.0	36	73	22	104	56	2	0	41	1.13
31922--32068	34	4.0	37	78	10	140	53	2	0	42	1.20
31922--32026	40	2.8	36	83	12	133	56	0	0	42	1.06
31959--32297	34	9.5	34	73	17	151	46	5	2	45	1.39
32104--32225	41	3.2	41	82	14	147	47	4	2	45	1.35
32188--32236	25	1.9	26	84	12	66	46	8	4	40	1.52
32188--32236	26	1.9	25	87	4	71	46	8	4	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32195--32314	38	3.1	37	81	12	127	45	9	4	40	1.55
32104--32297	75	2.6	74	79	13	186	46	6	3	43	1.45
32200--32297	37	2.6	35	81	13	99	43	10	4	41	1.57
32968--33690	84	8.7	85	80	4	721	23	21	25	29	1.99
32909--33690	165	4.7	165	86	2	1057	23	21	24	30	1.99
32909--33690	334	2.4	330	85	3	1039	23	21	24	30	1.99
37071--37115	19	2.4	19	92	3	74	66	8	13	11	1.44
38807--38903	36	2.7	36	82	9	101	75	2	8	14	1.12
38846--38903	30	1.9	30	86	13	84	75	0	6	17	1.01
38854--38905	12	4.3	12	73	9	52	75	0	5	19	1.01
40050--40352	34	8.5	35	78	15	259	45	6	2	44	1.44
40134--40319	77	2.4	81	84	10	219	45	5	3	44	1.46
40243--40291	26	1.9	26	87	4	73	46	8	4	40	1.52
40190--40318	42	3.1	42	78	14	144	47	6	3	43	1.44
40250--40369	38	3.1	37	81	12	127	45	9	4	40	1.55
40155--40320	76	2.2	74	83	12	210	47	6	3	43	1.43
40158--40319	81	2.1	75	86	9	218	47	6	3	43	1.44
40651--40693	15	2.9	15	79	6	52	76	4	4	13	1.10
45643--45681	14	2.7	15	88	8	62	25	30	20	23	1.98
45681--45735	14	4.0	14	76	4	58	12	21	20	45	1.84
63410--63456	3	16.0	3	86	4	69	29	2	2	65	1.15
65437--65511	39	1.9	39	83	5	98	46	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65461--65490	16	1.9	15	93	6	51	56	0	3	40	1.16
65720--65797	20	3.8	22	74	19	62	58	3	0	37	1.16
71375--71417	18	2.4	18	100	0	86	9	20	16	53	1.70

Tables:   1

The End!