Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000340.1 Hibiscus syriacus cultivar Beakdansim tig00000631_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83517

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--70
20
3.2
20
91
6
94
7
28
38
25
1.84
17--71
19
2.8
19
94
2
92
7
29
36
27
1.84
57--84
14
2.0
14
100
0
56
7
28
42
21
1.79
8--70
10
6.4
10
79
17
78
7
28
38
25
1.84
2482--2523
21
2.0
21
95
0
75
40
19
21
19
1.92
13179--13236
28
2.1
28
86
0
80
43
5
12
39
1.64
13274--13343
36
1.9
36
94
0
122
38
8
14
38
1.77
13630--13667
20
1.9
20
88
0
58
34
0
15
50
1.45
22287--22673
183
2.1
184
91
2
620
44
8
4
42
1.54
29551--29593
14
3.0
14
75
18
52
34
4
2
58
1.32
31003--31037
18
1.9
18
88
0
52
28
5
0
65
1.15
31288--31354
26
2.5
27
76
9
75
23
5
1
68
1.20
42649--43637
105
9.4
105
95
0
1638
33
25
18
22
1.96
44124--44166
14
3.0
14
75
18
52
34
6
2
55
1.39
45581--45619
19
2.0
21
90
10
64
28
5
0
66
1.12
45826--45877
17
3.0
17
80
8
52
21
0
7
71
1.11
45866--45933
27
2.5
27
76
4
75
23
5
1
69
1.19
48001--48040
21
1.9
21
94
0
71
32
30
15
22
1.94
48006--48121
59
1.9
61
85
3
164
39
20
17
22
1.92
48030--48121
20
4.7
20
76
12
91
40
19
18
21
1.92
48229--48305
20
3.8
20
73
1
73
20
16
18
44
1.87
48229--48326
20
4.8
20
75
7
67
20
17
19
42
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48332--48406
20
3.7
20
72
10
71
28
28
14
29
1.95
48351--48793
146
3.0
146
91
0
690
26
18
19
35
1.95
49180--49237
30
1.9
30
82
6
73
34
3
10
51
1.53
64484--64550
24
2.8
23
80
10
64
46
2
10
40
1.53
64518--64548
13
2.4
13
94
0
53
51
6
3
38
1.44
64505--64568
24
2.8
22
81
13
67
51
4
4
39
1.44
64614--64666
22
2.4
21
84
9
70
45
5
5
43
1.51
64598--64637
16
2.5
16
91
0
62
42
5
10
42
1.60
65778--65837
31
1.9
31
83
6
77
40
8
18
33
1.80
69246--69303
21
2.8
21
91
0
98
29
22
22
25
1.99
79355--79426
31
2.3
31
100
0
144
43
8
2
45
1.48
79548--79635
42
2.1
42
85
8
117
62
12
5
19
1.49

Tables:   1

The End!