Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003401.1 Hibiscus syriacus cultivar Beakdansim tig00007157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73191

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17876--17923
19
2.5
19
83
9
62
45
4
14
35
1.64
18458--18483
2
13.0
2
100
0
52
50
0
0
50
1.00
26204--26262
2
29.5
2
100
0
118
50
0
0
49
1.00
28243--28493
117
2.2
115
83
5
310
28
21
12
37
1.90
29143--29215
35
2.1
35
97
0
137
36
16
5
41
1.72
33976--34012
2
18.5
2
100
0
74
51
0
0
48
1.00
39279--39446
91
1.9
89
88
2
255
25
18
14
42
1.88
39372--39647
105
2.6
105
89
3
401
23
21
15
39
1.92
39586--40115
136
3.9
136
85
1
665
27
21
16
34
1.95
40207--40462
90
2.8
90
93
0
422
35
24
16
23
1.94
45188--45213
6
4.3
6
100
0
52
53
15
15
15
1.73
48933--49169
119
2.0
119
99
0
465
24
6
24
43
1.78
51071--51129
2
29.0
2
96
3
109
49
1
0
49
1.11
52339--52364
2
13.0
2
100
0
52
50
0
0
50
1.00
52748--52825
13
6.0
13
86
0
102
34
17
20
26
1.95
52748--52825
39
2.0
39
89
0
120
34
17
20
26
1.95
60237--60701
82
5.7
81
79
3
380
34
13
16
35
1.88
60237--60547
163
1.9
164
82
3
394
34
14
16
35
1.88
60402--60701
123
2.4
123
87
2
426
34
13
17
35
1.88
60238--60721
41
11.8
40
72
6
299
35
13
16
34
1.88
63097--63130
2
17.0
2
100
0
68
50
0
0
50
1.00
67169--67287
2
61.0
2
80
14
133
45
2
0
51
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67390--67416
2
13.5
2
100
0
54
48
0
0
51
1.00
68459--68524
32
2.1
32
97
0
123
25
12
25
36
1.91
72864--72919
22
2.5
22
82
0
58
39
21
1
37
1.64

Tables:   1

The End!