Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003402.1 Hibiscus syriacus cultivar Beakdansim tig00007167_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62190

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
465--641
90
2.0
89
92
1
291
36
11
6
44
1.68
5575--5637
29
2.1
31
85
5
85
34
19
4
41
1.72
8578--8623
23
2.0
23
83
4
58
54
0
8
36
1.32
9389--9421
2
16.5
2
100
0
66
51
0
48
0
1.00
9417--9762
179
2.0
171
93
4
593
29
9
20
40
1.84
10284--10831
277
2.0
277
99
0
1078
21
21
16
40
1.91
16684--16775
15
6.2
15
68
18
50
51
0
0
48
1.00
17178--17249
21
3.5
20
77
7
65
26
0
29
44
1.55
17192--17231
7
5.7
7
84
0
53
27
0
25
47
1.52
17178--17232
14
3.9
14
80
0
56
25
0
29
45
1.54
20539--20575
18
2.1
18
89
0
56
0
27
24
48
1.51
22170--22230
23
2.7
23
84
2
88
18
24
31
26
1.97
22170--22230
22
2.7
22
84
2
86
18
24
31
26
1.97
27984--28035
20
2.6
20
100
0
104
15
25
40
19
1.90
30782--30814
17
1.9
17
100
0
66
30
6
24
39
1.79
40720--40762
20
2.0
20
86
8
59
48
0
0
51
1.00
42327--42368
21
2.0
22
90
4
68
28
7
30
33
1.84
44465--44526
21
3.0
21
72
9
63
32
4
1
61
1.27
44465--44568
42
2.4
42
84
9
122
29
7
1
60
1.35
44491--44584
44
2.2
42
81
7
100
28
9
4
57
1.49
50028--50061
17
2.1
15
89
10
50
23
20
11
44
1.84
50530--50872
178
1.9
178
97
1
652
30
31
14
23
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51246--51272
2
13.5
2
100
0
54
48
0
0
51
1.00
51354--51417
26
2.5
28
82
17
93
45
6
20
28
1.75
54271--54527
39
6.4
40
78
6
200
30
16
16
36
1.91
54321--54565
39
6.1
41
75
6
148
32
16
15
36
1.90
54321--54535
41
5.3
41
78
5
172
31
17
15
36
1.91
54321--54565
121
2.0
119
81
7
282
32
16
15
36
1.90
56373--56447
39
1.9
39
94
2
134
18
18
13
49
1.79
60209--60252
20
2.2
20
91
0
70
29
25
6
38
1.81

Tables:   1

The End!