genome.fa.s3403.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003403.1 Hibiscus syriacus cultivar Beakdansim tig00007168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86962

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2315--2366	20	2.5	21	90	9	81	32	15	21	30	1.94
2429--2485	21	2.8	20	77	15	62	26	15	29	28	1.96
2356--2536	94	1.9	96	86	6	262	31	17	23	28	1.96
2986--3050	34	1.9	34	90	0	103	36	10	24	27	1.89
2952--3117	78	2.1	78	90	3	262	37	10	24	28	1.88
5432--5524	2	46.5	2	97	0	177	49	1	0	49	1.07
6431--6465	18	1.9	18	94	0	61	54	0	2	42	1.15
6536--6569	17	1.9	17	94	5	59	35	0	0	64	0.94
6707--6735	13	2.1	14	93	6	51	48	0	0	51	1.00
7411--7446	14	2.6	14	86	0	54	19	5	44	30	1.73
18319--18424	22	5.0	22	70	20	77	77	5	14	2	1.07
18339--18372	17	1.9	17	94	5	59	79	2	11	5	1.02
18390--18431	15	2.9	15	82	3	50	71	7	19	2	1.20
18319--18424	44	2.6	39	80	12	117	77	5	14	2	1.07
19289--19348	24	2.5	23	79	12	68	36	11	1	50	1.49
19494--19578	32	2.6	33	76	12	95	31	12	20	35	1.90
19846--20307	127	3.7	126	85	2	534	30	25	17	26	1.98
23275--23318	24	1.9	22	81	9	52	9	25	15	50	1.74
28979--29030	14	3.7	14	89	5	79	25	26	21	26	1.99
34478--34519	18	2.3	18	95	0	75	26	19	16	38	1.92
37151--37179	15	1.9	15	100	0	58	62	0	3	34	1.12
39745--39792	3	16.3	3	91	4	80	64	2	0	33	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40333--40437	50	2.1	51	82	5	124	36	17	20	25	1.94
40411--40705	45	6.5	45	78	4	263	37	19	19	23	1.94
40456--40714	91	2.8	91	81	3	290	38	18	20	22	1.93
40677--41138	38	12.0	38	84	4	534	40	17	18	24	1.91
43060--43101	19	2.2	19	95	0	75	9	16	0	73	1.08
43103--43128	10	2.6	10	100	0	52	15	11	0	73	1.11
43113--43184	22	3.3	21	73	9	72	11	15	0	73	1.09
50175--50246	23	3.2	22	73	15	76	27	25	23	23	2.00
54068--54107	21	1.9	21	89	0	62	35	7	5	52	1.51
54070--54114	21	2.2	21	84	4	56	37	4	4	53	1.41
56038--56194	65	2.4	65	88	0	215	32	18	22	26	1.97
60209--60257	3	16.3	3	100	0	98	65	0	0	34	0.93
63552--63580	2	14.5	2	100	0	58	51	0	0	48	1.00
64849--64886	14	2.8	14	88	11	53	47	5	0	47	1.24
65423--65455	16	2.1	16	88	5	50	51	9	3	36	1.49
66181--66242	31	2.0	31	93	0	106	43	8	8	40	1.64
69546--69627	35	2.3	35	83	4	94	36	15	23	24	1.94
70187--70224	20	1.9	20	84	10	51	42	5	21	31	1.75
70620--70696	21	3.7	21	80	0	91	23	11	22	42	1.86
70607--70706	42	2.4	42	81	0	119	21	15	26	38	1.92
70965--71010	18	2.6	18	82	0	56	45	4	13	36	1.63
75740--75797	21	2.8	21	81	0	71	25	13	25	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75790--75837	23	2.1	23	92	0	78	27	10	25	37	1.88
76073--76118	18	2.6	18	82	0	56	47	2	15	34	1.57
81108--81202	21	4.5	21	82	0	118	21	17	23	37	1.94
81108--81210	42	2.5	42	87	3	136	22	18	24	34	1.96
81205--81259	23	2.4	23	78	0	56	27	14	23	34	1.94
81476--81520	18	2.5	19	82	7	58	46	2	17	33	1.61
81536--81588	25	2.0	29	85	14	78	30	1	16	50	1.56

Tables:   1

The End!