genome.fa.s3404.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003404.1 Hibiscus syriacus cultivar Beakdansim tig00007170_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65307

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707--780	3	25.0	3	81	13	91	31	2	0	66	1.06
700--773	16	4.5	16	83	14	89	28	1	0	70	0.96
2252--2292	2	21.5	2	85	9	59	48	0	0	51	1.00
6198--6227	15	2.0	15	100	0	60	26	20	6	46	1.75
13597--13657	6	10.3	6	75	16	56	80	1	18	0	0.80
13601--13670	5	13.8	5	80	14	72	80	1	15	2	0.91
13601--13674	27	2.8	26	78	13	73	79	1	16	2	0.91
14554--15249	242	2.8	245	88	4	1041	39	16	18	25	1.91
14554--15249	123	5.7	123	90	2	1021	39	16	18	25	1.91
15475--15655	80	2.3	80	96	0	335	33	15	20	30	1.94
15837--15903	3	22.3	3	79	11	75	35	1	0	62	1.04
15831--15876	15	3.1	15	93	6	76	28	0	0	71	0.86
17184--17231	15	3.2	15	81	0	60	37	0	0	62	0.95
17099--17410	169	1.8	169	82	8	402	40	5	5	48	1.50
20397--20430	16	2.1	16	88	0	50	52	0	0	47	1.00
20548--20601	2	27.5	2	96	3	101	50	0	0	50	1.00
20610--20652	19	2.3	18	80	11	52	62	2	4	30	1.28
21196--21221	13	2.0	13	100	0	52	7	53	30	7	1.57
21884--21983	3	32.7	3	85	4	128	61	1	0	38	1.03
22109--23434	76	17.4	76	97	0	2492	34	21	21	21	1.97
24112--24166	22	2.5	22	87	0	83	38	16	10	34	1.84
24530--24685	54	2.9	54	90	0	240	23	23	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26429--26882	114	4.0	114	92	0	710	31	20	15	32	1.94
33936--33969	16	2.1	16	88	0	50	52	0	0	47	1.00
34087--34130	2	22.0	2	95	0	79	47	0	0	52	1.00
34732--34757	13	2.0	13	100	0	52	7	53	30	7	1.57
35414--35519	3	34.7	3	86	3	149	62	0	0	36	1.02
35800--35930	31	4.1	31	73	8	93	25	22	27	23	2.00
37976--38002	13	2.1	13	100	0	54	22	25	14	37	1.93
38020--38056	14	2.6	14	91	0	56	35	29	13	21	1.92
42818--43514	216	3.3	215	92	2	1127	51	8	11	28	1.67
43597--43706	2	54.5	2	70	15	75	48	2	3	45	1.34
43602--43911	20	15.4	19	68	19	109	46	4	4	44	1.44
43608--43682	22	3.5	22	80	14	84	48	2	4	45	1.35
43598--43680	42	1.9	44	90	4	134	48	2	3	45	1.33
43772--43809	11	3.5	11	88	0	58	50	2	2	44	1.30
43815--43868	17	3.1	17	81	2	63	46	0	1	51	1.11
43767--43919	22	7.5	21	72	15	83	45	1	4	48	1.34
43978--44014	6	6.2	6	100	0	74	32	0	0	67	0.91
44022--44066	13	3.6	12	80	11	54	37	6	0	55	1.26
43992--44072	35	2.3	35	83	10	103	38	6	0	55	1.25
44052--44156	31	3.4	31	72	18	92	40	5	5	47	1.51
44052--44156	33	3.3	33	75	18	107	40	5	5	47	1.51
44068--44294	62	3.6	62	72	16	203	41	7	7	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44150--44212	18	3.4	18	77	12	56	38	9	7	44	1.66
44066--44314	130	2.0	121	85	9	331	40	8	6	43	1.61
44225--44345	51	2.4	50	86	4	179	42	8	4	43	1.56
44312--44385	27	2.9	27	80	15	95	47	6	2	43	1.44
44260--44365	20	5.4	19	69	23	69	42	7	4	45	1.53
44442--44483	22	1.9	22	85	9	59	50	4	4	40	1.45
44475--44686	18	12.2	18	72	17	146	45	6	6	41	1.55
44524--44686	35	4.5	36	75	9	116	44	6	6	41	1.57
44475--44686	53	4.1	53	76	11	156	45	6	6	41	1.55
44508--44685	88	2.0	91	84	7	222	44	6	6	42	1.57
44577--44671	33	2.8	33	85	3	118	43	7	6	43	1.58
44697--44749	21	2.5	21	87	0	79	39	7	5	47	1.56
44682--44778	22	4.5	21	76	12	72	37	6	8	48	1.58
44760--44982	15	14.5	15	70	18	99	45	2	3	48	1.34
44839--44877	14	2.8	14	88	0	51	46	5	2	46	1.38
44909--44981	6	12.3	6	73	23	50	47	0	1	50	1.09
44861--45003	43	3.5	41	75	17	127	47	1	2	48	1.25
44881--45006	28	4.6	27	76	18	100	48	0	2	48	1.20
45112--45136	5	5.0	5	100	0	50	80	0	0	20	0.72
47403--47459	23	2.5	23	82	0	69	21	12	28	38	1.89
48134--48230	51	1.9	51	93	0	167	49	7	3	40	1.46
48351--48389	16	2.4	16	86	0	51	35	17	25	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49039--49157	50	2.4	50	82	8	138	19	32	27	20	1.96
53043--53096	6	9.5	6	78	11	51	12	35	20	31	1.90
53051--53090	21	1.9	21	100	0	80	12	37	20	30	1.89
53442--53476	18	1.9	18	100	0	70	25	22	22	28	1.99
54975--55196	111	2.0	111	93	0	381	45	9	8	36	1.66
55482--55606	50	2.5	49	83	6	162	17	28	37	16	1.91
55893--55926	15	2.3	15	84	0	50	20	41	8	29	1.82

Tables:   1

The End!