genome.fa.s3405.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003405.1 Hibiscus syriacus cultivar Beakdansim tig00007176_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91233

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3672--3942	20	13.6	20	79	9	96	36	24	16	21	1.94
3715--3902	40	4.7	39	73	16	152	38	23	17	20	1.93
3672--3822	80	1.9	79	82	4	187	37	25	16	20	1.93
3690--4000	60	5.2	59	71	16	171	36	23	16	23	1.94
3890--4000	39	2.8	39	83	6	127	34	22	13	29	1.92
3890--4000	19	5.7	19	86	6	125	34	22	13	29	1.92
3974--4020	18	2.5	19	82	6	60	29	23	14	31	1.95
4933--4986	24	2.2	24	96	0	99	20	16	20	42	1.89
5767--5802	18	2.0	18	94	0	63	58	25	0	16	1.38
6139--6223	20	4.6	20	70	16	83	20	21	22	36	1.95
6331--6441	51	2.2	52	86	3	154	52	15	2	29	1.56
7820--7914	20	4.6	21	78	15	99	23	18	33	24	1.97
7820--7914	41	2.3	41	79	13	106	23	18	33	24	1.97
10691--10777	20	4.3	20	89	2	122	17	12	25	44	1.83
10771--10817	20	2.3	20	92	0	76	21	17	25	36	1.94
10691--10797	40	2.7	40	81	11	114	18	13	24	43	1.85
10807--10862	20	2.8	20	78	2	60	25	12	30	32	1.92
13069--13400	43	7.6	44	76	7	300	32	17	23	25	1.96
22995--23059	28	2.3	28	83	0	85	43	16	15	24	1.87
23788--23828	20	2.0	22	90	9	68	51	0	0	48	1.00
30678--30733	30	1.9	30	85	7	80	42	0	19	37	1.52
30678--30741	30	2.1	30	82	5	76	43	0	18	37	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32625--32652	11	2.5	11	100	0	56	57	0	7	35	1.26
33239--33297	24	2.5	23	81	5	73	20	18	20	40	1.91
33254--33379	24	5.3	24	75	11	98	21	23	20	34	1.96
33309--33371	23	2.7	24	85	9	85	23	23	20	31	1.98
39084--39159	36	2.1	36	85	7	100	48	1	2	47	1.24
39461--39487	2	13.5	2	100	0	54	48	0	0	51	1.00
41442--41493	23	2.3	23	83	3	61	46	7	7	38	1.61
43284--43342	21	3.1	21	64	31	60	33	15	8	42	1.77
43284--43356	35	2.1	35	94	0	128	34	15	8	42	1.76
51296--51349	6	7.9	7	84	15	53	44	0	0	55	0.99
51301--51332	2	16.5	2	93	6	57	50	0	0	50	1.00
51361--51397	13	2.8	13	87	0	56	18	16	51	13	1.76
51408--51490	36	2.3	36	97	0	157	14	40	14	30	1.86
52052--52087	2	18.0	2	88	0	54	50	5	0	44	1.25
52048--52086	20	2.0	20	100	0	78	51	7	0	41	1.31
54679--54762	37	2.3	37	83	6	109	42	19	2	35	1.64
55304--55354	25	2.0	25	100	0	102	27	33	19	19	1.96
59284--59365	37	2.2	38	87	6	116	42	19	4	32	1.72
61637--61666	7	4.1	7	91	8	51	3	0	40	56	1.16
62857--62894	19	2.0	20	94	5	69	18	18	10	52	1.73
62849--62905	19	2.9	19	78	17	64	21	19	10	49	1.78
63785--63886	2	54.5	2	83	13	128	46	0	0	52	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67524--67843	134	2.4	131	84	6	410	31	16	20	30	1.95
67524--67906	134	2.9	135	81	3	391	31	17	21	29	1.96
70039--70109	37	1.9	39	86	11	105	46	0	7	46	1.30
73681--73884	99	2.0	100	90	0	320	33	15	17	33	1.91
74948--75553	85	7.1	85	83	3	623	36	19	16	27	1.94
77871--77937	25	2.8	23	81	18	84	37	4	2	55	1.36
77878--77936	22	2.5	24	89	8	86	37	5	3	54	1.39
77897--78001	27	3.9	26	75	13	79	40	2	2	53	1.30
78123--78182	31	1.9	31	86	0	84	53	10	6	30	1.60
78638--78674	2	18.5	2	100	0	74	51	0	0	48	1.00
84116--84185	33	2.2	32	86	2	95	21	30	15	32	1.94
85619--85723	51	2.1	48	91	8	167	39	19	12	29	1.88
86211--86331	63	1.9	63	83	9	158	28	18	19	33	1.95
87204--87276	21	3.5	21	94	0	128	21	21	36	19	1.95
88746--88791	19	2.4	19	85	7	58	30	13	6	50	1.66
90904--90945	17	2.5	17	96	0	75	42	4	28	23	1.74

Tables:   1

The End!