genome.fa.s3406.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003406.1 Hibiscus syriacus cultivar Beakdansim tig00007177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66868

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906--1025	56	2.1	57	98	1	233	18	13	20	47	1.82
1696--1825	29	4.8	29	70	18	100	34	8	6	50	1.60
1709--1807	50	2.0	48	86	3	135	31	9	7	52	1.60
1863--1904	19	2.2	20	87	12	61	47	0	0	52	1.00
8445--8761	107	3.0	107	97	0	580	38	21	16	23	1.93
9845--9883	14	2.8	13	88	11	60	79	0	5	15	0.90
10774--10910	44	3.1	45	67	17	115	56	12	2	29	1.48
10774--10948	84	2.0	84	91	7	282	57	11	2	29	1.46
13361--13419	13	4.5	13	76	17	59	71	1	6	20	1.18
13360--13418	12	4.4	14	76	18	54	72	1	6	18	1.15
13600--13661	12	5.4	12	78	18	78	16	20	9	53	1.71
13595--13670	25	3.5	21	83	15	100	14	18	10	56	1.66
14908--14954	21	2.2	21	88	0	67	19	23	19	38	1.93
16364--16412	14	3.5	15	76	23	61	69	0	10	20	1.17
17241--17381	79	1.9	75	83	14	184	55	12	2	29	1.51
21032--21378	175	2.0	175	82	2	428	34	18	19	28	1.95
28031--28066	18	2.0	18	88	0	54	30	8	16	44	1.77
29434--29748	149	2.1	149	98	1	605	27	16	21	34	1.95
29716--29760	23	2.0	23	90	0	72	22	26	26	24	2.00
31715--31876	34	4.6	34	71	11	105	42	4	6	46	1.50
31715--32044	35	9.1	34	78	9	205	41	2	7	48	1.44
31751--32084	35	9.2	36	78	11	283	41	2	7	49	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31746--32084	110	3.1	109	77	10	331	41	2	7	48	1.44
31751--32084	73	4.6	73	80	8	283	41	2	7	49	1.44
31751--32082	38	9.1	35	75	8	175	40	2	7	49	1.44
32088--32139	4	13.8	4	80	8	56	25	3	0	71	1.03
32297--32327	16	2.0	15	93	6	53	19	41	25	12	1.87
33416--33441	3	8.7	3	100	0	52	30	0	0	69	0.89
33508--33533	4	6.5	4	100	0	52	23	0	0	76	0.78
35283--35327	19	2.4	19	92	3	74	13	13	6	66	1.43
38711--39226	84	6.2	84	80	4	530	30	24	20	24	1.98
39881--40042	34	4.6	34	71	11	105	42	4	6	46	1.50
39881--40210	35	9.1	34	78	9	205	41	2	7	48	1.44
39917--40250	35	9.2	36	78	11	283	41	2	7	49	1.44
39912--40250	110	3.1	109	77	10	331	41	2	7	48	1.44
39917--40250	73	4.6	73	80	8	283	41	2	7	49	1.44
39917--40248	38	9.1	35	75	8	175	40	2	7	49	1.44
40246--40310	25	2.7	24	69	9	60	27	3	0	69	1.03
40254--40309	4	14.8	4	81	7	64	25	3	0	71	1.02
40464--40494	16	2.0	15	93	6	53	19	41	25	12	1.87
41559--41584	3	8.7	3	100	0	52	30	0	0	69	0.89
41650--41675	4	6.5	4	100	0	52	23	0	0	76	0.78
48848--49187	41	8.3	41	67	14	143	29	15	22	32	1.95
48848--49187	83	4.2	82	76	8	300	29	15	22	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49603--49653	22	2.3	22	89	0	75	41	9	13	35	1.78
50875--50980	40	2.6	41	86	1	151	37	17	18	25	1.93
53007--53095	43	2.1	42	81	8	99	37	23	11	28	1.89
55799--55849	17	2.9	17	88	5	66	41	7	9	41	1.67
56722--56793	23	3.1	23	93	2	117	41	19	18	20	1.90
56802--56871	36	1.9	37	82	2	88	31	24	21	22	1.98
56937--57041	36	2.8	36	81	8	122	30	16	18	35	1.92
57089--57131	18	2.7	15	77	19	50	44	11	25	18	1.84
57932--58036	29	3.7	29	84	2	131	23	8	22	44	1.80
57990--58056	29	2.3	29	84	0	80	28	7	22	41	1.80
65095--65129	13	2.8	12	86	4	52	20	48	20	11	1.79
65148--65281	58	2.3	58	89	2	198	25	8	20	45	1.79
65148--65256	29	3.8	29	91	4	175	23	9	20	46	1.79
65148--65281	29	4.6	30	84	5	168	25	8	20	45	1.79

Tables:   1

The End!