Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003407.1 Hibiscus syriacus cultivar Beakdansim tig00007179_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 758105
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 3 of 4
Found at i:427888 original size:27 final size:27
Alignment explanation
Indices: 427858--428004 Score: 122
Period size: 27 Copynumber: 5.9 Consensus size: 27
427848 CTGACTACCC
427858 TTGGAGTTGGACTGACTCCCCTTGCAG
1 TTGGAGTTGGACTGACTCCCCTTGCAG
* *
427885 TTGGAGTTGGACCGACTCCCCTTGAAG
1 TTGGAGTTGGACTGACTCCCCTTGCAG
* * *
427912 -T--A-CT--ACTGGCTCCTCTTGCAG
1 TTGGAGTTGGACTGACTCCCCTTGCAG
*
427933 TTGGAGTTGGACTGACTCCCCTTGAAG
1 TTGGAGTTGGACTGACTCCCCTTGCAG
* *
427960 -T--A--T-GACTAGA-TCCTCTCGCAG
1 TTGGAGTTGGACT-GACTCCCCTTGCAG
427981 TTGGAGTTGGACTGACTCCCCTTG
1 TTGGAGTTGGACTGACTCCCCTTG
428005 AAGTATGACT
Statistics
Matches: 90, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
21 25 0.28
22 5 0.06
23 1 0.01
24 4 0.04
25 1 0.01
26 5 0.06
27 49 0.54
ACGTcount: A:0.17, C:0.27, G:0.27, T:0.30
Consensus pattern (27 bp):
TTGGAGTTGGACTGACTCCCCTTGCAG
Found at i:427930 original size:48 final size:48
Alignment explanation
Indices: 427844--428035 Score: 280
Period size: 48 Copynumber: 4.0 Consensus size: 48
427834 TCATCCGAGC
* * * *
427844 TGGACTGACTACCCTTGGAGT-TGGACTGACTCCCCTTGCAGTTGGAGT
1 TGGACTGACTCCCCTTGAAGTAT-GACTGGCTCCTCTTGCAGTTGGAGT
*
427892 TGGACCGACTCCCCTTGAAGTACT-ACTGGCTCCTCTTGCAGTTGGAGT
1 TGGACTGACTCCCCTTGAAGTA-TGACTGGCTCCTCTTGCAGTTGGAGT
* * *
427940 TGGACTGACTCCCCTTGAAGTATGACTAGATCCTCTCGCAGTTGGAGT
1 TGGACTGACTCCCCTTGAAGTATGACTGGCTCCTCTTGCAGTTGGAGT
427988 TGGACTGACTCCCCTTGAAGTATGACTGGCTCCTCTTGCAGTTGGAGT
1 TGGACTGACTCCCCTTGAAGTATGACTGGCTCCTCTTGCAGTTGGAGT
428036 GGAAGTTCTT
Statistics
Matches: 129, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
47 1 0.01
48 127 0.98
50 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.27, T:0.30
Consensus pattern (48 bp):
TGGACTGACTCCCCTTGAAGTATGACTGGCTCCTCTTGCAGTTGGAGT
Found at i:429671 original size:2 final size:2
Alignment explanation
Indices: 429666--429712 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
429656 TAGGATAAGT
429666 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
429708 GA GA G
1 GA GA G
429713 TTTTCTCTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
GA
Found at i:431697 original size:20 final size:20
Alignment explanation
Indices: 431669--431707 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
431659 ATTAAGTAGC
* *
431669 AAAATTAATATTTTTGATAG
1 AAAAATAATATTTTAGATAG
431689 AAAAATAATATTTTAGATA
1 AAAAATAATATTTTAGATA
431708 ACGTTTTACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (20 bp):
AAAAATAATATTTTAGATAG
Found at i:442020 original size:5 final size:5
Alignment explanation
Indices: 442010--442069 Score: 54
Period size: 5 Copynumber: 12.4 Consensus size: 5
442000 TAGATATAAA
* * **
442010 AAAAT AAAAT AAAAT -AAA- AAAAT AAATT CAACC AAAAT AAAA- AGAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT
442058 AAAAT AAAAT AA
1 AAAAT AAAAT AA
442070 TAAATAAATA
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
4 7 0.16
5 36 0.82
6 1 0.02
ACGTcount: A:0.77, C:0.05, G:0.02, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:442220 original size:73 final size:73
Alignment explanation
Indices: 442069--442221 Score: 163
Period size: 73 Copynumber: 2.1 Consensus size: 73
442059 AAATAAAATA
*
442069 ATAAATAAATAAATAAAGCATAGAAAAATGATAGTAAATAATAGTATAAATATAAAATAAAAAGG
1 ATAAATAAATAAATAAAGCATAAAAAAATGATAGTAAATAATAGTATAAATATAAAATAAAAAGG
*
442134 TAATATAT
66 TAATATAC
* * *
442142 ATAAATAAATAAAATACA-CATAAAGAAAATGA-AG-CAATAA-A-TATAATATATATAATGATA
1 ATAAATAAAT-AAATAAAGCATAAA-AAAATGATAGTAAATAATAGTATAA-ATATAAAAT-A-A
*
442202 AAATGTAATATAC
61 AAAGGTAATATAC
*
442215 GTAAATA
1 ATAAATA
442222 GATGTTAGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
70 5 0.07
71 9 0.13
72 6 0.09
73 35 0.51
74 13 0.19
ACGTcount: A:0.62, C:0.03, G:0.08, T:0.26
Consensus pattern (73 bp):
ATAAATAAATAAATAAAGCATAAAAAAATGATAGTAAATAATAGTATAAATATAAAATAAAAAGG
TAATATAC
Found at i:442634 original size:12 final size:12
Alignment explanation
Indices: 442617--442646 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
442607 GTGCACATGC
442617 AAAAAAAAGATA
1 AAAAAAAAGATA
442629 AAAAAAAAGATA
1 AAAAAAAAGATA
442641 AAAAAA
1 AAAAAA
442647 GATGCTACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.07, T:0.07
Consensus pattern (12 bp):
AAAAAAAAGATA
Found at i:442863 original size:35 final size:36
Alignment explanation
Indices: 442793--442891 Score: 121
Period size: 35 Copynumber: 2.8 Consensus size: 36
442783 GTGCTTGTGG
* * *
442793 ATCCTATCTTTAGGAGTTTAAAACATAGCAAAATTCT
1 ATCCTAT-TTTAGGAGTTTGAATCCTAGCAAAATTCT
*
442830 ATCCTATTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTAGGAGTTTGAATCCTAGCAAAATTCT
*
442865 ATCATATTTT-GAGAGTTTGAATCCTAG
1 ATCCTATTTTAG-GAGTTTGAATCCTAG
442892 TAGGACGAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
34 1 0.02
35 28 0.51
36 19 0.35
37 7 0.13
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTGAATCCTAGCAAAATTCT
Found at i:443652 original size:106 final size:104
Alignment explanation
Indices: 443352--444216 Score: 870
Period size: 106 Copynumber: 8.3 Consensus size: 104
443342 AATATTGTTC
* * * * *
443352 CGAGTCCAATATCCTCCGATGTGAAGTTGAAATTGGTTCTGGAACTGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCT-GAAAT-TGAAATTGTTTGTTGACA
* * * * * *
443417 GTCAGTCGCCCCTTTGCTGTGAAGTTGAGCTTGTGCTGTCT
64 ATCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
* * * * *
443458 CGAGTCTAATATCCTTCGCTGTGAAGATGAAATTGACTCTG-AA-CGAAA-T-CTTGTTGACAAT
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAATTGTTTGTTGACAAT
*
443519 CAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
66 CAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
** *
443558 CGAGTCCAATATCCTTCGCTACGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA-TTG-AAATTGTTTGTTGACA
*
443623 ATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
64 ATCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
* * * * ** *
443664 CGAGTGGCACGATATCCTCCG-TCGTGGAGTTGAAA-TCGCGGATGAAACTGAAAAGTTGTTTGT
1 CGAGT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGC-TCTGAAATTG-AAA-TTGTTTGT
* *
443727 TGACAACCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCT
59 TGACAATCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
* * * * * *
443773 CGGGTAGCACGATATCCTCCG-TCGTGGAGTTGAAATCGGCTCTGGAATTGGGAAATTGTTTGTT
1 CGAGT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAATT--GAAATTGTTTGTT
*
443837 GACAACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
60 GACAATCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
* * * *
443882 CGAGTCCAATATCCTTCGCTGTGAAGTTGAGATTGGCTC------CGAAATTGCTTGTTGACAGT
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAATTGTTTGTTGACAAT
* * *
443941 CAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCT
66 CAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
* * * * *
443980 TGGGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCCCTGAAACTGGGAAATTGTTTATTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAA-T-TGAAATTGTTTGTTGACA
*
444045 ACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
64 ATCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
* * * * *
444086 CGAGTCCAATATCCTTCGCTGTGAAGTTGAGATTGGCTC------CGAAATTGCTTGTCGACAGT
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAATTGTTTGTTGACAAT
* * *
444145 CAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGCGTTGTCT
66 CAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
**
444184 -GAAGTCCAATATCCTTCATTGTGAAGTTGAAAT
1 CG-AGTCCAATATCCTTCGCTGTGAAGTTGAAAT
444217 CCACTCTCGA
Statistics
Matches: 650, Mismatches: 84, Indels: 58
0.82 0.11 0.07
Matches are distributed among these distances:
97 1 0.00
98 165 0.25
100 79 0.12
101 3 0.00
102 4 0.01
103 1 0.00
104 4 0.01
105 2 0.00
106 201 0.31
107 2 0.00
108 11 0.02
109 171 0.26
110 5 0.01
111 1 0.00
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (104 bp):
CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGAAATTGTTTGTTGACAAT
CAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCT
Found at i:443993 original size:98 final size:98
Alignment explanation
Indices: 443824--444213 Score: 512
Period size: 98 Copynumber: 3.9 Consensus size: 98
443814 CTGGAATTGG
* *
443824 GAAATTGTTTGTTGACAACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCC
1 GAAATTGCTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCC
443889 AATATCCTTCGCTGTGAAGTTGAGATTGGCTCC
66 AATATCCTTCGCTGTGAAGTTGAGATTGGCTCC
** * * * *
443922 GAAATTGCTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGTGCTGTCTTGGGTCC
1 GAAATTGCTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCC
* *
443987 AATATCCTTCGCTGTGAAGTTGAAATTGGCCCTGAAACTGG
66 AATATCCTTCGCTGTGAAGTTGAGATTGG--CT----C--C
* * *
444028 GAAATTGTTTATTGACAACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCC
1 GAAATTGCTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCC
444093 AATATCCTTCGCTGTGAAGTTGAGATTGGCTCC
66 AATATCCTTCGCTGTGAAGTTGAGATTGGCTCC
* ** * *
444126 GAAATTGCTTGTCGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTTGCGTTGTCT-GAAGTC
1 GAAATTGCTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCG-AGTC
**
444190 CAATATCCTTCATTGTGAAGTTGA
65 CAATATCCTTCGCTGTGAAGTTGA
444214 AATCCACTCT
Statistics
Matches: 252, Mismatches: 31, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
97 1 0.00
98 161 0.64
100 3 0.01
104 3 0.01
106 84 0.33
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.33
Consensus pattern (98 bp):
GAAATTGCTTGTTGACAACCAGCCGCCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCC
AATATCCTTCGCTGTGAAGTTGAGATTGGCTCC
Found at i:444076 original size:204 final size:204
Alignment explanation
Indices: 443352--444216 Score: 1002
Period size: 204 Copynumber: 4.2 Consensus size: 204
443342 AATATTGTTC
* * * *
443352 CGAGTCCAATATCCTCCGATGTGAAGTTGAAATTGGTTCTGGAACTGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACA
** * * * * * *
443417 GTCAGTCGCCCCTTTGCTGTGAAGTTGAGCTTGTGCTGTCTCGAGTCTAATATCCTTCGCTGTGA
66 ACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGA
* * * *
443482 AGATGAAATTGACTCTGAACGAAA-T-CTTGTTGACAATCAGCCGTCCCTTCGTTGTGAAGTTGA
131 AGTTGAAATTGGCTC----CGAAATTGCTTGTTGACAATCAGCCGCCCCTTCGCTGTGAAGTTGA
443545 ACTTGTGTTGTCT
192 ACTTGTGTTGTCT
** * * * *
443558 CGAGTCCAATATCCTTCGCTACGAAGTTGAAATTGGCTCTGAAATTTGAAAAATGTTTGTTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACA
* * * *
443623 ATCAGCCGTCCCTTCGTTGTGAAGTTGAACTTGTGTTGTCTCGAGTGGCACGATATCCTCCG-TC
66 ACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGT--C-CAATATCCTTCGCT-
* * * * * * * *
443687 GTGGAGTTGAAATCGCGGATGAAACTGAAAAGTTGTTTGTTGACAACCAGCCGTCCCTTCGTTGT
127 GTGAAGTTGAAAT--TGGCT----CCG-AAA-TTGCTTGTTGACAATCAGCCGCCCCTTCGCTGT
443752 GAAGTTGAACTTGTGTTGTCT
184 GAAGTTGAACTTGTGTTGTCT
* * * * * * *
443773 CGGGTAGCACGATATCCTCCG-TCGTGGAGTTGAAATCGGCTCTGGAATTGGGAAATTGTTTGTT
1 CGAGT--C-CAATATCCTTCGCT-GTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTT
443837 GACAACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
62 GACAACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCT
* *
443902 GTGAAGTTGAGATTGGCTCCGAAATTGCTTGTTGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGA
127 GTGAAGTTGAAATTGGCTCCGAAATTGCTTGTTGACAATCAGCCGCCCCTTCGCTGTGAAGTTGA
* *
443967 GCTTGTGCTGTCT
192 ACTTGTGTTGTCT
* * * *
443980 TGGGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCCCTGAAACTGGGAAATTGTTTATTGACA
1 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACA
444045 ACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGA
66 ACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGA
* * * *
444110 AGTTGAGATTGGCTCCGAAATTGCTTGTCGACAGTCAGCCGCCCCTTCGCTGTGAAGTTGAGCTT
131 AGTTGAAATTGGCTCCGAAATTGCTTGTTGACAATCAGCCGCCCCTTCGCTGTGAAGTTGAACTT
*
444175 GCGTTGTCT
196 GTGTTGTCT
**
444184 -GAAGTCCAATATCCTTCATTGTGAAGTTGAAAT
1 CG-AGTCCAATATCCTTCGCTGTGAAGTTGAAAT
444217 CCACTCTCGA
Statistics
Matches: 568, Mismatches: 70, Indels: 44
0.83 0.10 0.06
Matches are distributed among these distances:
203 1 0.00
204 213 0.38
205 2 0.00
206 94 0.17
207 51 0.09
208 5 0.01
209 22 0.04
211 3 0.01
212 3 0.01
213 3 0.01
214 1 0.00
215 75 0.13
216 2 0.00
217 2 0.00
218 91 0.16
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (204 bp):
CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAACTGGGAAATTGTTTGTTGACA
ACCAGCCGTCCCTTCGCTGTGAAGTTGAACTTGTGTTGTCTCGAGTCCAATATCCTTCGCTGTGA
AGTTGAAATTGGCTCCGAAATTGCTTGTTGACAATCAGCCGCCCCTTCGCTGTGAAGTTGAACTT
GTGTTGTCT
Found at i:444693 original size:37 final size:37
Alignment explanation
Indices: 444624--444697 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
444614 CAAAGATATT
** * * *
444624 TTTTGTTTCAAGGGAAACGGTCTTAAGGGAGACAAAA
1 TTTTGTTTCAAGAAAAACCGTCTCAAGAGAGACAAAA
*
444661 TTTTGTTTTAAGAAAAACCGTCTCAAGAGAGACAAAA
1 TTTTGTTTCAAGAAAAACCGTCTCAAGAGAGACAAAA
444698 CTTAGTTCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (37 bp):
TTTTGTTTCAAGAAAAACCGTCTCAAGAGAGACAAAA
Found at i:444826 original size:37 final size:37
Alignment explanation
Indices: 444770--444974 Score: 173
Period size: 36 Copynumber: 5.8 Consensus size: 37
444760 AAGATGATGC
*
444770 TTCAAGAGAAAACTGTCTCAAGGGAGACAAAATTTTGT
1 TTCAAGAG-AAACTGTCTCAAGAGAGACAAAATTTTGT
* **
444808 TTCAAGAGAAACTGTCTCAAGAGAGACAAAA-CTCAT
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTGT
* * *
444844 TTCAAGGGAAA-TGTTTTC-A-A-TG------TTTATGT
1 TTCAAGAGAAACTG-TCTCAAGAGAGACAAAATTT-TGT
* * *
444873 TTCAAGAGAAACTGTCTCAAGGGAGAAAAAAATTTGT
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTGT
* * *
444910 TTAAAGGGAAACTGTCTCAAGAGAGAC-AAAGTTTGT
1 TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTGT
*
444946 TTCAAGGGAAACTGTCTCAAGAGAGACAA
1 TTCAAGAGAAACTGTCTCAAGAGAGACAA
444975 TGGCGAGCAC
Statistics
Matches: 132, Mismatches: 21, Indels: 29
0.73 0.12 0.16
Matches are distributed among these distances:
28 1 0.01
29 14 0.11
30 3 0.02
32 1 0.01
33 1 0.01
34 1 0.01
35 3 0.02
36 49 0.37
37 49 0.37
38 10 0.08
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (37 bp):
TTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTTGT
Found at i:446483 original size:10 final size:10
Alignment explanation
Indices: 446471--446543 Score: 58
Period size: 10 Copynumber: 6.9 Consensus size: 10
446461 TTTTGTCCCA
*
446471 TTTTTTTTTAT
1 TTTTTTTTT-C
446482 TTTTGTTCTTTC
1 TTTT-TT-TTTC
*
446494 TTTTTTGTTC
1 TTTTTTTTTC
*
446504 TTATTTTTTCC
1 TT-TTTTTTTC
*
446515 TTTTTGTTTC
1 TTTTTTTTTC
446525 TTTTCTTTTT-
1 TTTT-TTTTTC
446535 TTTTTTTTT
1 TTTTTTTTT
446544 TTTGTTCTGA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
9 5 0.10
10 19 0.37
11 18 0.35
12 6 0.12
13 3 0.06
ACGTcount: A:0.03, C:0.10, G:0.04, T:0.84
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:446509 original size:26 final size:23
Alignment explanation
Indices: 446471--446549 Score: 79
Period size: 23 Copynumber: 3.3 Consensus size: 23
446461 TTTTGTCCCA
446471 TTTTT-TTTTATTTTTGTTCTTTCT
1 TTTTTGTTTTATTTTT-TTCTTT-T
*
446495 TTTTTGTTCTTATTTTTTCCTTTT
1 TTTTTGTT-TTATTTTTTTCTTTT
* * * *
446519 TGTTTCTTTTCTTTTTTTTTTTT
1 TTTTTGTTTTATTTTTTTCTTTT
446542 TTTTTGTT
1 TTTTTGTT
446550 CTGATTGAAT
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
23 18 0.40
24 12 0.27
25 7 0.16
26 8 0.18
ACGTcount: A:0.03, C:0.09, G:0.05, T:0.84
Consensus pattern (23 bp):
TTTTTGTTTTATTTTTTTCTTTT
Found at i:446511 original size:34 final size:33
Alignment explanation
Indices: 446471--446546 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
446461 TTTTGTCCCA
446471 TTTTTTTTTATTTTTG-TTC-TTTCTTTTTTGTT
1 TTTTTTTTTATTTTTGTTTCTTTTCTTTTTT-TT
**
446503 CTTATTTTTTCCTTTTTGTTTCTTTTCTTTTTTTT
1 -TT-TTTTTTTATTTTTGTTTCTTTTCTTTTTTTT
446538 TTTTTTTTT
1 TTTTTTTTT
446547 GTTCTGATTG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
33 8 0.22
34 14 0.38
35 5 0.14
36 10 0.27
ACGTcount: A:0.03, C:0.09, G:0.04, T:0.84
Consensus pattern (33 bp):
TTTTTTTTTATTTTTGTTTCTTTTCTTTTTTTT
Found at i:446542 original size:14 final size:14
Alignment explanation
Indices: 446472--446546 Score: 53
Period size: 14 Copynumber: 5.3 Consensus size: 14
446462 TTTGTCCCAT
*
446472 TTTTTTTTATTTTTG
1 TTTTTTTT-TTTTTC
* * *
446487 TTCTTTCTTTTTTG
1 TTTTTTTTTTTTTC
* * *
446501 TTCTTATTTTTTCC
1 TTTTTTTTTTTTTC
*
446515 TTTTTGTTTCTTTTC
1 TTTTT-TTTTTTTTC
446530 TTTTTTTTTTTTT-
1 TTTTTTTTTTTTTC
446543 TTTT
1 TTTT
446547 GTTCTGATTG
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
13 4 0.08
14 27 0.56
15 17 0.35
ACGTcount: A:0.03, C:0.09, G:0.04, T:0.84
Consensus pattern (14 bp):
TTTTTTTTTTTTTC
Found at i:449563 original size:5 final size:5
Alignment explanation
Indices: 449550--449619 Score: 65
Period size: 5 Copynumber: 14.4 Consensus size: 5
449540 GTTAGATATA
* * * **
449550 AAAAA AAAAT AAAAT -AAA- AAAAT AAATT CAACC AAAAT AAAA- AGAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A-AAAT
449598 AAAAT AAAAT AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AA
449620 TAAATAAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
4 7 0.13
5 45 0.85
6 1 0.02
ACGTcount: A:0.79, C:0.04, G:0.01, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:449570 original size:15 final size:15
Alignment explanation
Indices: 449550--449635 Score: 57
Period size: 15 Copynumber: 5.2 Consensus size: 15
449540 GTTAGATATA
449550 AAAAAAAAATAAAAT
1 AAAAAAAAATAAAAT
449565 AAAAAAATAAATTCAACCAAAAT
1 -AAAAAA-AAA-T--A--AAA-T
*
449588 AAAAAGAAATAAAAT
1 AAAAAAAAATAAAAT
*
449603 AAAATAAAATAAAAT
1 AAAAAAAAATAAAAT
*
449618 AATAAATAAAT-AAAT
1 AA-AAAAAAATAAAAT
449633 AAA
1 AAA
449636 GCATAGAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 18
0.71 0.06 0.22
Matches are distributed among these distances:
14 1 0.02
15 22 0.39
16 15 0.26
17 3 0.05
18 2 0.04
20 2 0.04
21 3 0.05
22 8 0.14
23 1 0.02
ACGTcount: A:0.78, C:0.03, G:0.01, T:0.17
Consensus pattern (15 bp):
AAAAAAAAATAAAAT
Found at i:450185 original size:11 final size:11
Alignment explanation
Indices: 450169--450196 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
450159 GTGCACATGC
450169 AAAAAAAAGAT
1 AAAAAAAAGAT
450180 AAAAAAAAGAT
1 AAAAAAAAGAT
450191 AAAAAA
1 AAAAAA
450197 GATGCTACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (11 bp):
AAAAAAAAGAT
Found at i:450413 original size:35 final size:36
Alignment explanation
Indices: 450343--450442 Score: 121
Period size: 35 Copynumber: 2.8 Consensus size: 36
450333 GTGCTTGTGG
* * *
450343 ATCCTATCTTTAGGAGTTTAAAACATAGCAAAATTCT
1 ATCCTAT-TTTAGGAGTTTGAATCCTAGCAAAATTCT
*
450380 ATCCTATTTTAGGAG-TTGAATCCTAGCAGAATTCT
1 ATCCTATTTTAGGAGTTTGAATCCTAGCAAAATTCT
* *
450415 ATCATATTTTTGAGAGTTTGAATCCTAG
1 ATCCTATTTTAG-GAGTTTGAATCCTAG
450443 TAGGACGAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
35 26 0.47
36 11 0.20
37 18 0.33
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.38
Consensus pattern (36 bp):
ATCCTATTTTAGGAGTTTGAATCCTAGCAAAATTCT
Found at i:455696 original size:24 final size:24
Alignment explanation
Indices: 455645--455697 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
455635 CATCGAATCT
* *
455645 TTTATAAGTTCGTTTATTAACTTA
1 TTTATAAGTTCATTTATTAACTCA
* *
455669 TTTATAAGTTCATTTATTGACTCG
1 TTTATAAGTTCATTTATTAACTCA
455693 TTTAT
1 TTTAT
455698 TTGGATCTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.55
Consensus pattern (24 bp):
TTTATAAGTTCATTTATTAACTCA
Found at i:456593 original size:10 final size:10
Alignment explanation
Indices: 456578--456630 Score: 78
Period size: 10 Copynumber: 5.7 Consensus size: 10
456568 CATTTAATAA
456578 ATAAACGAAC
1 ATAAACGAAC
456588 ATAAACGAAC
1 ATAAACGAAC
456598 ----ACGAAC
1 ATAAACGAAC
456604 ATAAACGAAC
1 ATAAACGAAC
456614 ATAAACGAAC
1 ATAAACGAAC
456624 ATAAACG
1 ATAAACG
456631 TTGGAGACCC
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
6 6 0.15
10 33 0.85
ACGTcount: A:0.58, C:0.21, G:0.11, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:456603 original size:16 final size:16
Alignment explanation
Indices: 456582--456614 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
456572 TAATAAATAA
456582 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
456598 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
456614 A
1 A
456615 TAAACGAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.24, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:457721 original size:14 final size:14
Alignment explanation
Indices: 457704--457746 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
457694 GATTGAGTTA
*
457704 AACATAAATGAACG
1 AACATAAACGAACG
*
457718 AACATAACCGAACG
1 AACATAAACGAACG
457732 AACATAAACGAACG
1 AACATAAACGAACG
457746 A
1 A
457747 GACCTATGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.56, C:0.21, G:0.14, T:0.09
Consensus pattern (14 bp):
AACATAAACGAACG
Found at i:463447 original size:4 final size:4
Alignment explanation
Indices: 463438--463464 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
463428 ATTCTTCCCC
463438 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
463465 TGCTTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:464337 original size:2 final size:2
Alignment explanation
Indices: 464330--464355 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
464320 GTGATTCTGA
464330 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
464356 GAGTTGTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:469049 original size:59 final size:60
Alignment explanation
Indices: 469004--469172 Score: 178
Period size: 60 Copynumber: 2.8 Consensus size: 60
468994 AGGATAATAT
469004 TTTGTCAAGTCCCAAAAC-ATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTC
1 TTTGTCAAGTCCCAAAACTATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTC
** * *** *
469063 TTTGTTGAGTCTCTCCACTATTAAAAGTTACAAAATGATCCTTCGACTATAGTGAGTTTC
1 TTTGTCAAGTCCCAAAACTATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTC
* ** * *** * * *
469123 TTAGTTGAGTCTCTCGATTATTAAAAGTTACAAAATGGTCACTCGACTAT
1 TTTGTCAAGTCCCAAAACTATTAAAAGTTACAAAATGATCATTCGACTAT
469173 TCATTATGCT
Statistics
Matches: 96, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
59 12 0.12
60 84 0.88
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36
Consensus pattern (60 bp):
TTTGTCAAGTCCCAAAACTATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTC
Found at i:469101 original size:60 final size:60
Alignment explanation
Indices: 469022--469172 Score: 248
Period size: 60 Copynumber: 2.5 Consensus size: 60
469012 GTCCCAAAAC
*
469022 ATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTCTTTGTTGAGTCTCTCCACT
1 ATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTCTTAGTTGAGTCTCTCCACT
* * *
469082 ATTAAAAGTTACAAAATGATCCTTCGACTATAGTGAGTTTCTTAGTTGAGTCTCTCGATT
1 ATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTCTTAGTTGAGTCTCTCCACT
* *
469142 ATTAAAAGTTACAAAATGGTCACTCGACTAT
1 ATTAAAAGTTACAAAATGATCATTCGACTAT
469173 TCATTATGCT
Statistics
Matches: 84, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 84 1.00
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.36
Consensus pattern (60 bp):
ATTAAAAGTTACAAAATGATCATTCGACTATAGTGAGTTTCTTAGTTGAGTCTCTCCACT
Found at i:471431 original size:32 final size:32
Alignment explanation
Indices: 471402--471479 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
471392 GTGACATACA
* **
471402 ACATGTACATAAGTGATAATTTGACACATATC
1 ACATGTACATAAGTAATAACGTGACACATATC
* **
471434 ACATGTATATAAGTAATGGCGTGACACATATC
1 ACATGTACATAAGTAATAACGTGACACATATC
471466 ACATGTACATAAGT
1 ACATGTACATAAGT
471480 TATAGTGTGG
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.29
Consensus pattern (32 bp):
ACATGTACATAAGTAATAACGTGACACATATC
Found at i:471845 original size:20 final size:20
Alignment explanation
Indices: 471820--472074 Score: 207
Period size: 20 Copynumber: 12.7 Consensus size: 20
471810 GATTTTCCAT
* *
471820 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATACGTA
* **
471840 AATCGCAACGCGAACATATA
1 AATCGCAACGCGAATACGTA
*
471860 AATCGCAACGCG-ATTC-TGA
1 AATCGCAACGCGAATACGT-A
* * * *
471879 CTATCGCAACGAGTATCCGTA
1 -AATCGCAACGCGAATACGTA
471900 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACGT-A
* * *
471921 AATCGTAACGTGTAT-CTGTA
1 AATCGCAACGCGAATAC-GTA
*
471941 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGTA
*
471961 AATCGCAACGCGTAT-CTGTA
1 AATCGCAACGCGAATAC-GTA
*
471981 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGTA
* * *
472001 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
472021 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACGT-A
* *
472042 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGTA
472062 AATCGCAACGCGA
1 AATCGCAACGCGA
472075 TTTTTAAAGC
Statistics
Matches: 188, Mismatches: 33, Indels: 28
0.76 0.13 0.11
Matches are distributed among these distances:
18 1 0.01
19 3 0.02
20 146 0.78
21 37 0.20
22 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGAATACGTA
Found at i:471866 original size:40 final size:40
Alignment explanation
Indices: 471820--472074 Score: 275
Period size: 40 Copynumber: 6.3 Consensus size: 40
471810 GATTTTCCAT
* * *
471820 AATCGCAACGCGAATATGAAAATCGCAACGCG-AACATATA
1 AATCGCAACGCGAATACGAAAATCGCAACGCGTATC-TGTA
* ** * *
471860 AATCGCAACGCG-ATTCTGACTATCGCAACGAGTATCCGTA
1 AATCGCAACGCGAATAC-GAAAATCGCAACGCGTATCTGTA
* *
471900 AATCGCAACGAC-AATACGTAAAATCGTAACGTGTATCTGTA
1 AATCGCAACG-CGAATACG-AAAATCGCAACGCGTATCTGTA
* *
471941 AATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTA
1 AATCGCAACGCGAATACGAAAATCGCAACGCGTATCTGTA
* * * *
471981 AATCGCAACGAGAATACGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGAAAATCGCAACGCGTATCTGTA
*
472021 AATCGCAACGAC-AATACGTAAAATCGCAACGCGTATCCGTA
1 AATCGCAACG-CGAATACG-AAAATCGCAACGCGTATCTGTA
472062 AATCGCAACGCGA
1 AATCGCAACGCGA
472075 TTTTTAAAGC
Statistics
Matches: 183, Mismatches: 23, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.01
40 111 0.61
41 70 0.38
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (40 bp):
AATCGCAACGCGAATACGAAAATCGCAACGCGTATCTGTA
Found at i:471943 original size:81 final size:79
Alignment explanation
Indices: 471858--472071 Score: 268
Period size: 81 Copynumber: 2.6 Consensus size: 79
471848 CGCGAACATA
* * *
471858 TAAATCGCAACGCGATTC-TGACTATCGCAACGAGTATCCGTAAATCGCAACGACAATACGTAAA
1 TAAATCGCAACGCGATACGT-A-AATCGCAACGCGTATCCGTAAATCGCAACGACAATACGT-AA
* * *
471922 ATCGTAACGTGTATCTG
63 ATCGCAACGCGTATCCG
* * *
471939 TAAATCGCAACGAGAATACGTAAATCGCAACGCGTATCTGTAAATCGCAACGAGAATACGTAAAT
1 TAAATCGCAACGCG-ATACGTAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAAT
*
472004 CGCAATGCGTATCCG
65 CGCAACGCGTATCCG
*
472019 TAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAAATCGCAACG
1 TAAATCGCAACG-CGATACGT-AAATCGCAACGCGTATCCGTAAATCGCAACG
472072 CGATTTTTAA
Statistics
Matches: 116, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
80 33 0.28
81 78 0.67
82 4 0.03
83 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.21
Consensus pattern (79 bp):
TAAATCGCAACGCGATACGTAAATCGCAACGCGTATCCGTAAATCGCAACGACAATACGTAAATC
GCAACGCGTATCCG
Found at i:471983 original size:121 final size:121
Alignment explanation
Indices: 471820--472071 Score: 339
Period size: 121 Copynumber: 2.1 Consensus size: 121
471810 GATTTTCCAT
* * * * *
471820 AATCGCAACGCGAATATGAAAATCGCAACGCGAACATATAAATCGCAACGCG-ATTC-TGACTAT
1 AATCGCAACGAGAATACGAAAATCGCAACGCGAACATATAAATCGCAACGAGAATACGT-A-AAT
* * *
471883 CGCAACGAGTATCCGTAAATCGCAACGACAATACGTAAAATCGTAACGTGTATCTGTA
64 CGCAACGAGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTA
* * *
471941 AATCGCAACGAGAATACGTAAATCGCAACGCGTATC-TGTAAATCGCAACGAGAATACGTAAATC
1 AATCGCAACGAGAATACGAAAATCGCAACGCG-AACATATAAATCGCAACGAGAATACGTAAATC
* *
472005 GCAATGCGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTA
65 GCAACGAGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTA
472062 AATCGCAACG
1 AATCGCAACG
472072 CGATTTTTAA
Statistics
Matches: 115, Mismatches: 13, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
121 108 0.94
122 6 0.05
123 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.19
Consensus pattern (121 bp):
AATCGCAACGAGAATACGAAAATCGCAACGCGAACATATAAATCGCAACGAGAATACGTAAATCG
CAACGAGTATCCGTAAATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTA
Found at i:472656 original size:20 final size:20
Alignment explanation
Indices: 472631--472681 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
472621 TTCTAAACTT
*
472631 AAAATCGCAACATGAAAATG
1 AAAATCGCAACACGAAAATG
472651 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
**
472671 ACTATCGCAAC
1 AAAATCGCAAC
472682 GAGAGAATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.51, C:0.22, G:0.14, T:0.14
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:472730 original size:19 final size:19
Alignment explanation
Indices: 472708--472791 Score: 106
Period size: 19 Copynumber: 4.7 Consensus size: 19
472698 GAAACCAAAA
*
472708 TCGCATTGCGATTTTAATT
1 TCGCGTTGCGATTTTAATT
*
472727 TCGCGTTGCGA--TT-CTT
1 TCGCGTTGCGATTTTAATT
472743 T--CGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTAATT
*
472760 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTAATT
472779 TCGCGTTGCGATT
1 TCGCGTTGCGATT
472792 CTCTCGTTGC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
14 8 0.14
16 5 0.09
17 5 0.09
19 38 0.68
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTAATT
Found at i:472791 original size:52 final size:52
Alignment explanation
Indices: 472708--472845 Score: 168
Period size: 52 Copynumber: 2.6 Consensus size: 52
472698 GAAACCAAAA
* * * * **
472708 TCGCATTGCGATTTTAATTTCGCGTTGCGATTCTTTCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCAATAGTAATT
*
472760 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCAATAGTCATT
1 TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCAATAGTAATT
** *
472812 TCTGCGTTGCGATAGTCATTCTCTCGTTGCGATT
1 TC-GCGTTGCGATTTTCATT-TCGCGTTGCGATT
472846 TTCATTTCAA
Statistics
Matches: 74, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
52 47 0.64
53 15 0.20
54 12 0.16
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.44
Consensus pattern (52 bp):
TCGCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCAATAGTAATT
Found at i:472842 original size:20 final size:20
Alignment explanation
Indices: 472789--472844 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
472779 TCGCGTTGCG
*
472789 ATTCTCTCGTTGCAATAGTC
1 ATTCTCTCGTTGCGATAGTC
472809 ATT-TCTGCGTTGCGATAGTC
1 ATTCTCT-CGTTGCGATAGTC
472829 ATTCTCTCGTTGCGAT
1 ATTCTCTCGTTGCGAT
472845 TTTCATTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
19 3 0.09
20 27 0.82
21 3 0.09
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.41
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATAGTC
Found at i:472850 original size:20 final size:19
Alignment explanation
Indices: 472713--472853 Score: 104
Period size: 19 Copynumber: 7.8 Consensus size: 19
472703 CAAAATCGCA
* *
472713 TTGCGATTTTAATTTCGCG
1 TTGCGATTTTCATTTCTCG
472732 TTGCGA--TTC--TT-TCG
1 TTGCGATTTTCATTTCTCG
* *
472746 TTGCGATTTTAATTTCGCG
1 TTGCGATTTTCATTTCTCG
*
472765 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCTCG
472784 TTGCGA--TTC---TCTCG
1 TTGCGATTTTCATTTCTCG
* **
472798 TTGCAATAGTCATTTCTGCG
1 TTGCGATTTTCATTTCT-CG
**
472818 TTGCGATAGTCATTCTCTCG
1 TTGCGATTTTCATT-TCTCG
472838 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
472854 AACCAAAAGA
Statistics
Matches: 99, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
14 17 0.17
15 2 0.02
16 4 0.04
17 5 0.05
18 2 0.02
19 37 0.37
20 29 0.29
21 3 0.03
ACGTcount: A:0.13, C:0.21, G:0.20, T:0.46
Consensus pattern (19 bp):
TTGCGATTTTCATTTCTCG
Found at i:472974 original size:25 final size:24
Alignment explanation
Indices: 472920--472974 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
472910 TTATGTTTAT
* *
472920 TGTTTTTGGTATATCTTCACAGTG
1 TGTTTTTGGTATATCTTAACAGTA
472944 TAGTTTTTGGTATATC-TAACTTAGTA
1 T-GTTTTTGGTATATCTTAAC--AGTA
472970 TGTTT
1 TGTTT
472975 ATTGTTTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 4 0.15
25 18 0.69
26 4 0.15
ACGTcount: A:0.20, C:0.09, G:0.18, T:0.53
Consensus pattern (24 bp):
TGTTTTTGGTATATCTTAACAGTA
Found at i:476179 original size:14 final size:14
Alignment explanation
Indices: 476160--476195 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
476150 ATTGTTTAAT
476160 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
476174 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
476188 TGATTTGT
1 TGATTTGT
476196 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:476339 original size:33 final size:33
Alignment explanation
Indices: 476302--476381 Score: 124
Period size: 33 Copynumber: 2.4 Consensus size: 33
476292 AAAAATGACT
* * *
476302 ATCGCAATGCGAAATGAAAATCGCAATGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
476335 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
476368 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
476382 CTAAATTCGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.46, C:0.20, G:0.21, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:476358 original size:19 final size:19
Alignment explanation
Indices: 476302--476360 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
476292 AAAAATGACT
476302 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
*
476321 ATCGCAAT--G--A-GAGA
1 ATCGCAATGCGAAATGAAA
476335 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATGAAA
476354 ATCGCAA
1 ATCGCAA
476361 CGACAAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
14 11 0.33
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 18 0.55
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAATGCGAAATGAAA
Found at i:476433 original size:33 final size:33
Alignment explanation
Indices: 476391--476590 Score: 240
Period size: 33 Copynumber: 5.8 Consensus size: 33
476381 ACTAAATTCG
* *
476391 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
476424 CGTTGCGATTTTCATTTCGCATTGTGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
* *
476457 CGTTGTGATTTTCATTTCGCATTGCGATAGTCATTTCCG
1 CGTTGCGATTTTCATTTCGCATTGCGAT--TC---T-CT
* * *
476496 CGTTGCGATTTT-AGTTTCGCGTTGCGATTTTGT
1 CGTTGCGATTTTCA-TTTCGCATTGCGATTCTCT
476529 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
476562 CGTTGCGATTTTCATTTCCGCGTTGCGAT
1 CGTTGCGATTTTCATTT-CGCATTGCGAT
476591 AGACATTAAG
Statistics
Matches: 143, Mismatches: 15, Indels: 17
0.82 0.09 0.10
Matches are distributed among these distances:
33 101 0.71
34 12 0.08
35 2 0.01
37 1 0.01
38 2 0.01
39 25 0.17
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.46
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:476572 original size:105 final size:106
Alignment explanation
Indices: 476389--476597 Score: 323
Period size: 105 Copynumber: 2.0 Consensus size: 106
476379 AAACTAAATT
* *
476389 CGCGTTGCGATTTTCATTTCGCTTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGTGATTC
1 CGCGTTGCGATTTTCATTTCGCGTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGATTC
* *
476454 TCTCGTTGTGATTTTCATTT-CGCATTGCGATAGTCATTTC
66 TCTCGTTGCGATTTTCATTTCCGCATTGCGATAGACATTTC
***
476494 CGCGTTGCGATTTT-AGTTTCGCGTTGCGATTTTGTCGTTGCGATTTTCATTTCGCATTGCGATT
1 CGCGTTGCGATTTTCA-TTTCGCGTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGATT
*
476558 CTCTCGTTGCGATTTTCATTTCCGCGTTGCGATAGACATT
65 CTCTCGTTGCGATTTTCATTTCCGCATTGCGATAGACATT
476598 AAGATGATTG
Statistics
Matches: 94, Mismatches: 8, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
104 1 0.01
105 77 0.82
106 16 0.17
ACGTcount: A:0.12, C:0.22, G:0.21, T:0.44
Consensus pattern (106 bp):
CGCGTTGCGATTTTCATTTCGCGTTGCGATTCCCTCGTTGCGATTTTCATTTCGCATTGCGATTC
TCTCGTTGCGATTTTCATTTCCGCATTGCGATAGACATTTC
Found at i:476636 original size:20 final size:20
Alignment explanation
Indices: 476563--476636 Score: 53
Period size: 20 Copynumber: 3.6 Consensus size: 20
476553 CGATTCTCTC
** *
476563 GTTGCGATTTTCATTTCCGC
1 GTTGCGATAGTCATTTCCGT
* **
476583 GTTGCGATAGACA-TTAAGAT
1 GTTGCGATAGTCATTTCCG-T
476603 GATTGCGA-ACGTCATTTCCGT
1 G-TTGCGATA-GTCATTTCCGT
476624 GTTGCGATAGTCA
1 GTTGCGATAGTCA
476637 AATGAATGCC
Statistics
Matches: 40, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
19 3 0.08
20 22 0.55
21 12 0.30
22 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.35
Consensus pattern (20 bp):
GTTGCGATAGTCATTTCCGT
Found at i:478926 original size:12 final size:12
Alignment explanation
Indices: 478909--478942 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
478899 TTCTTTGGGA
478909 TTTCTTCTTCTT
1 TTTCTTCTTCTT
478921 TTTCTTCTTCTT
1 TTTCTTCTTCTT
478933 TTTCTTCTTC
1 TTTCTTCTTC
478943 AGTGTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTCTTCTTCTT
Found at i:479151 original size:24 final size:24
Alignment explanation
Indices: 479117--479170 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
479107 CTGAAAAATC
479117 ATCAAAATCCGAGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
* *
479141 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
479165 ATCAAA
1 ATCAAA
479171 TTTCAAATAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.41, C:0.20, G:0.19, T:0.20
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:480039 original size:20 final size:20
Alignment explanation
Indices: 480016--480286 Score: 317
Period size: 20 Copynumber: 13.4 Consensus size: 20
480006 GTCAGAATCT
480016 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
480036 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
480056 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
480076 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
*
480096 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
* * **
480116 CATTGCGATTTTCCAAATTCG
1 CGTTGCGA-TTTACGTATTCG
*
480137 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
* * **
480157 CATTGCGATTTTCCAAATTCG
1 CGTTGCGA-TTTACGTATTCG
*
480178 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
* * *
480198 CATTGCGATTTTCCTATTCG
1 CGTTGCGATTTACGTATTCG
** *
480218 TATTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
* * **
480238 CATTGCGATTTTCCAAATTCG
1 CGTTGCGA-TTTACGTATTCG
480259 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
*
480279 CATTGCGA
1 CGTTGCGA
480287 ATTAGGAAAA
Statistics
Matches: 209, Mismatches: 39, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
20 164 0.78
21 45 0.22
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (20 bp):
CGTTGCGATTTACGTATTCG
Found at i:480148 original size:41 final size:41
Alignment explanation
Indices: 480016--480286 Score: 395
Period size: 41 Copynumber: 6.7 Consensus size: 41
480006 GTCAGAATCT
* * * **
480016 CGTTGCGATTTACGTATTCGCGTTGCGA-TTTACGTATTCG
1 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
* * * **
480056 CGTTGCGATTTACGTATTCGCGTTGCGA-TTTACGTATTCG
1 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
480096 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
1 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
480137 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
1 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
*
480178 CGTTGCGATTTACGTAATCGCATTGCGATTTTCC-TATTCG
1 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
**
480218 TATTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
1 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
*
480259 CGTTGCGATTTACGTATTCGCATTGCGA
1 CGTTGCGATTTACGTAATCGCATTGCGA
480287 ATTAGGAAAA
Statistics
Matches: 217, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
40 103 0.47
41 114 0.53
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
Found at i:480216 original size:122 final size:121
Alignment explanation
Indices: 480016--480286 Score: 434
Period size: 122 Copynumber: 2.2 Consensus size: 121
480006 GTCAGAATCT
* ** * *
480016 CGTTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCGTTGCGATTTACGTATTCGCGTTG
1 CGTTGCGATTTACGTATTCGCATTGCGATTTACAAATTCGCGTTGCGATTTACGTAATCGCATTG
* *
480081 CGATTTACGTATTCGCGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
66 CGATTTACCTATTCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
* *
480137 CGTTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCGCGTTGCGATTTACGTAATCGCATT
1 CGTTGCGATTTACGTATTCGCATTGCGA-TTTACAAATTCGCGTTGCGATTTACGTAATCGCATT
* *
480202 GCGATTTTCCTATTCGTATTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
65 GCGATTTACCTATTCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
480259 CGTTGCGATTTACGTATTCGCATTGCGA
1 CGTTGCGATTTACGTATTCGCATTGCGA
480287 ATTAGGAAAA
Statistics
Matches: 137, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
121 26 0.19
122 111 0.81
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.38
Consensus pattern (121 bp):
CGTTGCGATTTACGTATTCGCATTGCGATTTACAAATTCGCGTTGCGATTTACGTAATCGCATTG
CGATTTACCTATTCGCATTGCGATTTACGTAATCGCATTGCGATTTTCCAAATTCG
Found at i:480307 original size:21 final size:21
Alignment explanation
Indices: 480283--480328 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
480273 TATTCGCATT
480283 GCGAA-TTAGGAAAATCGCAAC
1 GCGAATTTAGG-AAATCGCAAC
* *
480304 GCGAATTTTGGAAATCGCAAT
1 GCGAATTTAGGAAATCGCAAC
480325 GCGA
1 GCGA
480329 TAGTCAGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.37, C:0.17, G:0.26, T:0.20
Consensus pattern (21 bp):
GCGAATTTAGGAAATCGCAAC
Found at i:484212 original size:18 final size:18
Alignment explanation
Indices: 484189--484224 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
484179 TAATGTAAAA
484189 CTGCTTTCTTTAAAGAAT
1 CTGCTTTCTTTAAAGAAT
484207 CTGCTTTCTTTAAAGAAT
1 CTGCTTTCTTTAAAGAAT
484225 AGAATCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (18 bp):
CTGCTTTCTTTAAAGAAT
Found at i:486610 original size:21 final size:22
Alignment explanation
Indices: 486584--486633 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
486574 TTCACTTTTT
486584 TAAAAAATCAA-TAAAATACAA
1 TAAAAAATCAATTAAAATACAA
* *
486605 TAAAAAA-GAATTAAAATTCAA
1 TAAAAAATCAATTAAAATACAA
486626 TAAAAAAT
1 TAAAAAAT
486634 GTAAACATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 2 0.08
21 23 0.92
ACGTcount: A:0.70, C:0.06, G:0.02, T:0.22
Consensus pattern (22 bp):
TAAAAAATCAATTAAAATACAA
Found at i:488115 original size:6 final size:6
Alignment explanation
Indices: 488106--488130 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
488096 GTCGTGGTCG
488106 TGGTAA TGGTAA TGGTAA TGGTAA T
1 TGGTAA TGGTAA TGGTAA TGGTAA T
488131 ACGTGTAACG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.36
Consensus pattern (6 bp):
TGGTAA
Found at i:488241 original size:21 final size:21
Alignment explanation
Indices: 488193--488285 Score: 102
Period size: 21 Copynumber: 4.6 Consensus size: 21
488183 GAAATAGAAA
*
488193 ATCGTAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
488214 A--GCAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
** ** *
488233 ATCGCAACGCGAAATGGAA-A
1 ATCGCAACGCGATTTTCAACT
*
488253 ATCACAACGCGATTTTCAACT
1 ATCGCAACGCGATTTTCAACT
488274 ATCGCAACGCGA
1 ATCGCAACGCGA
488286 ACTGGAAAAT
Statistics
Matches: 56, Mismatches: 13, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
19 18 0.32
20 14 0.25
21 24 0.43
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (21 bp):
ATCGCAACGCGATTTTCAACT
Found at i:488241 original size:60 final size:61
Alignment explanation
Indices: 488170--488285 Score: 189
Period size: 60 Copynumber: 1.9 Consensus size: 61
488160 ACAACTGTAG
**
488170 ACTATCGCAACGCGAAATAGAAAATCGTAACGCGATTTTCAACTA-GCAACGCGATTTTCA
1 ACTATCGCAACGCGAAATAGAAAATCACAACGCGATTTTCAACTACGCAACGCGATTTTCA
*
488230 ACTATCGCAACGCGAAATGGAAAATCACAACGCGATTTTCAACTATCGCAACGCGA
1 ACTATCGCAACGCGAAATAGAAAATCACAACGCGATTTTCAACTA-CGCAACGCGA
488286 ACTGGAAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
60 42 0.82
62 9 0.18
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.21
Consensus pattern (61 bp):
ACTATCGCAACGCGAAATAGAAAATCACAACGCGATTTTCAACTACGCAACGCGATTTTCA
Found at i:488262 original size:20 final size:20
Alignment explanation
Indices: 488233--488306 Score: 76
Period size: 20 Copynumber: 3.6 Consensus size: 20
488223 ATTTTCAACT
488233 ATCGCAACGCGAAATGGAAA
1 ATCGCAACGCGAAATGGAAA
* ** ** *
488253 ATCACAACGCGATTTTCAACT
1 ATCGCAACGCGAAATGGAA-A
*
488274 ATCGCAACGCGAACTGGAAA
1 ATCGCAACGCGAAATGGAAA
488294 ATCGCAACGCGAA
1 ATCGCAACGCGAA
488307 TTTGCGATAG
Statistics
Matches: 41, Mismatches: 12, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
20 27 0.66
21 14 0.34
ACGTcount: A:0.39, C:0.26, G:0.20, T:0.15
Consensus pattern (20 bp):
ATCGCAACGCGAAATGGAAA
Found at i:488263 original size:41 final size:41
Alignment explanation
Indices: 488216--488305 Score: 162
Period size: 41 Copynumber: 2.2 Consensus size: 41
488206 TTTCAACTAG
488216 CAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCA
1 CAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCA
* *
488257 CAACGCGATTTTCAACTATCGCAACGCGAACTGGAAAATCG
1 CAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCA
488298 CAACGCGA
1 CAACGCGA
488306 ATTTGCGATA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.18
Consensus pattern (41 bp):
CAACGCGATTTTCAACTATCGCAACGCGAAATGGAAAATCA
Found at i:494769 original size:25 final size:25
Alignment explanation
Indices: 494741--494792 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
494731 TATTTTACTT
494741 TTTATTATGTGATGTTTAAGAATGG
1 TTTATTATGTGATGTTTAAGAATGG
494766 TTTATTATGTGATGTTTAAGAATGG
1 TTTATTATGTGATGTTTAAGAATGG
494791 TT
1 TT
494793 ATGGGTCGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (25 bp):
TTTATTATGTGATGTTTAAGAATGG
Found at i:498039 original size:3 final size:3
Alignment explanation
Indices: 498031--498069 Score: 53
Period size: 3 Copynumber: 12.7 Consensus size: 3
498021 CAAAAATGAT
498031 TAA TAA TAA TAA TAA -ACA TAA TAA TAA TAAA TAA TAA TA
1 TAA TAA TAA TAA TAA TA-A TAA TAA TAA T-AA TAA TAA TA
498070 GTTTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
2 1 0.03
3 28 0.85
4 4 0.12
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:514152 original size:23 final size:23
Alignment explanation
Indices: 514099--514167 Score: 102
Period size: 23 Copynumber: 3.0 Consensus size: 23
514089 CTCATATAAA
* * *
514099 TGCACCGAAGTGCCACATAGAAT
1 TGCACCGTAGTGCCGCGTAGAAT
514122 TGCACCGTAGTGCCGCGTAGAAT
1 TGCACCGTAGTGCCGCGTAGAAT
*
514145 TGCACCGTAATGCCGCGTAGAAT
1 TGCACCGTAGTGCCGCGTAGAAT
514168 AATGTCCATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (23 bp):
TGCACCGTAGTGCCGCGTAGAAT
Found at i:514295 original size:18 final size:18
Alignment explanation
Indices: 514272--514307 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
514262 GAATACATAT
514272 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
514290 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
514308 TATCATTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.11
Consensus pattern (18 bp):
ATGTCCCGAAGGACCACA
Found at i:514358 original size:121 final size:121
Alignment explanation
Indices: 514168--514652 Score: 828
Period size: 121 Copynumber: 4.0 Consensus size: 121
514158 CGCGTAGAAT
** * *
514168 AATGTCCATAAGGACCACATATCATTCCTTAAGAATCATATACATAT-ACTAGAGATCAAGTATG
1 AATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAG-GATCAAGTATG
*
514232 CGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
65 TGTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
514289 AATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGT
1 AATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGT
514354 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
66 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
* * * *
514410 AATGTCCCAAAAGACCACATATCATTCCTTAAGAATCATATACATACGTCAAGGATCAAGTATGT
1 AATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGT
514475 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
66 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
* * * * *
514531 AATGTCCCGAAGGACCACATAGCATTCCTTAAGAATCATATATATATACTAGGGATCAAGTATGT
1 AATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGT
514596 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
66 GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
514652 A
1 A
514653 TAGACCCTCG
Statistics
Matches: 345, Mismatches: 18, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
121 342 0.99
122 3 0.01
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (121 bp):
AATGTCCCGAAGGACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGT
GTCTCACCAGACTTCACACATGTTCCAAAGAATACATATATGTCCCGAAGGACCAC
Found at i:514416 original size:18 final size:18
Alignment explanation
Indices: 514393--514428 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
514383 GAATACATAT
* *
514393 ATGTCCCGAAGGACCACA
1 ATGTCCCAAAAGACCACA
514411 ATGTCCCAAAAGACCACA
1 ATGTCCCAAAAGACCACA
514429 TATCATTCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.33, G:0.17, T:0.11
Consensus pattern (18 bp):
ATGTCCCAAAAGACCACA
Found at i:514537 original size:18 final size:18
Alignment explanation
Indices: 514514--514549 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
514504 GAATACATAT
514514 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
514532 ATGTCCCGAAGGACCACA
1 ATGTCCCGAAGGACCACA
514550 TAGCATTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.33, G:0.22, T:0.11
Consensus pattern (18 bp):
ATGTCCCGAAGGACCACA
Found at i:515955 original size:21 final size:21
Alignment explanation
Indices: 515929--515972 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
515919 ATTTTATTCG
* *
515929 CTTGAAGGGGTATCGGTTCCC
1 CTTGAAGGGGTACCGATTCCC
*
515950 CTTGAATGGGTACCGATTCCC
1 CTTGAAGGGGTACCGATTCCC
515971 CT
1 CT
515973 AGCCCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.30
Consensus pattern (21 bp):
CTTGAAGGGGTACCGATTCCC
Found at i:519860 original size:60 final size:60
Alignment explanation
Indices: 519796--519931 Score: 166
Period size: 60 Copynumber: 2.3 Consensus size: 60
519786 TTGAATGTTT
* * * **
519796 TAATTTCATCCTCAAACTATGACTCTCATTCTAATTTAGTCCTTAAACTTTAGAACATTC
1 TAATTTCATCCTCAAACTATGACCCTCATTCTAAATCAGTCCCCAAACTTTAGAACATTC
* * * *
519856 TAATTTTATCCAT-AAACTATGACCCTCTTTCTAAATCAGTCCCCAAACTTTTGAATATTC
1 TAATTTCATCC-TCAAACTATGACCCTCATTCTAAATCAGTCCCCAAACTTTAGAACATTC
*
519916 TAACTTCATCCTCAAA
1 TAATTTCATCCTCAAA
519932 TTAATCCAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
59 1 0.02
60 61 0.97
61 1 0.02
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.38
Consensus pattern (60 bp):
TAATTTCATCCTCAAACTATGACCCTCATTCTAAATCAGTCCCCAAACTTTAGAACATTC
Found at i:521194 original size:18 final size:18
Alignment explanation
Indices: 521173--521220 Score: 53
Period size: 17 Copynumber: 2.7 Consensus size: 18
521163 AAATTGTCCT
*
521173 TATTATATATTTGTATAA
1 TATTATATATTTGTAAAA
* *
521191 TATTACA-AATTGTAAAA
1 TATTATATATTTGTAAAA
521208 TATTTATATATTT
1 TA-TTATATATTT
521221 TCTTTAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
17 10 0.43
18 10 0.43
19 3 0.13
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (18 bp):
TATTATATATTTGTAAAA
Found at i:535748 original size:38 final size:38
Alignment explanation
Indices: 535697--535776 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
535687 TGCTTGGTTG
535697 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
1 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
535735 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
1 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
535773 GTTG
1 GTTG
535777 AACATGTGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.10, C:0.15, G:0.28, T:0.47
Consensus pattern (38 bp):
GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
Found at i:536708 original size:105 final size:105
Alignment explanation
Indices: 536492--537060 Score: 870
Period size: 105 Copynumber: 5.4 Consensus size: 105
536482 GTATTGTTCC
* * * * **
536492 GGAGTCCAATATCATTCACT-GTGAAGTTGAAATTGGCTCCGAAATTGAGAAGTTGTCGGTTGAC
1 GGAGTCCAATATCCTTC-GTGGTGAAGTTGAAATTGGCTCTGAAATTGAGAA-ATGTTTGTTGAC
** ****
536556 AGTCAGCGGTCCCTTCGTCGTGAAGTTGAACTTATACTGTCT
64 AACCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
*
536598 TGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
1 GGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
*
536663 CCAGCGGTCCCTTCGTCATGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
*
536703 GGAGTCCAATATCCTTCATGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
1 GGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
536768 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * ** * *
536808 GGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGACTATGGGATTGAGAAATGGTGGTTGACAA
1 GGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
536873 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
536913 GGAGTCCAATATCCTTCGTTGTGAAGTTGAAATTGGCTCCGAATTTGAGAAATGTTTGTTGACAA
1 GGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
536978 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
66 CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
* * *
537018 AGAGTCCAATATCCTTCGTTGTGAAGTTGAAATCGGCTCTGAA
1 GGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAA
537061 TAAAACCTGC
Statistics
Matches: 426, Mismatches: 36, Indels: 3
0.92 0.08 0.01
Matches are distributed among these distances:
105 381 0.89
106 45 0.11
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (105 bp):
GGAGTCCAATATCCTTCGTGGTGAAGTTGAAATTGGCTCTGAAATTGAGAAATGTTTGTTGACAA
CCAGCGGTCCCTTCGTCGTGAAGTTGAACTTGCGTTGTCT
Found at i:547330 original size:20 final size:20
Alignment explanation
Indices: 547292--547335 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
547282 ATGGTTAGTA
*
547292 AAATAAAAATAAATGGAAAT
1 AAATAAAAATAAATAGAAAT
547312 AAATAAAAATAACA-AGAAAT
1 AAATAAAAATAA-ATAGAAAT
547332 AAAT
1 AAAT
547336 GGCAATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.73, C:0.02, G:0.07, T:0.18
Consensus pattern (20 bp):
AAATAAAAATAAATAGAAAT
Found at i:549801 original size:38 final size:38
Alignment explanation
Indices: 549750--549829 Score: 160
Period size: 38 Copynumber: 2.1 Consensus size: 38
549740 TGCTTGGTTG
549750 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
1 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
549788 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
1 GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
549826 GTTG
1 GTTG
549830 AACATGTGAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 42 1.00
ACGTcount: A:0.10, C:0.15, G:0.28, T:0.47
Consensus pattern (38 bp):
GTTGTGGATGTATCCTTGTATCTCACGTCGTTGTGTTT
Found at i:552227 original size:35 final size:35
Alignment explanation
Indices: 552180--552282 Score: 116
Period size: 35 Copynumber: 2.9 Consensus size: 35
552170 AAAATAGTCA
* * *
552180 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
* * * *
552215 TCAATTTTATTCTAAACTCTAAATTCTAAAATAAT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
* * *
552250 TCAATTAAATTTTAAACCCCAAATTCTAAAATA
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATA
552283 CTTTAGTTTA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 57 1.00
ACGTcount: A:0.43, C:0.19, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
Found at i:554335 original size:21 final size:23
Alignment explanation
Indices: 554311--554361 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
554301 GAAAAATATG
554311 ATAAAAAT-TA-GATTT-TAGATT
1 ATAAAAATATATGATTTGTA-ATT
*
554332 ATAAAAATATATTATTTGTAATT
1 ATAAAAATATATGATTTGTAATT
554355 ATAAAAA
1 ATAAAAA
554362 AGTTTCTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 8 0.31
22 2 0.08
23 14 0.54
24 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (23 bp):
ATAAAAATATATGATTTGTAATT
Found at i:555679 original size:6 final size:7
Alignment explanation
Indices: 555651--555683 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
555641 CGGCGACTAT
555651 GGAAAGG
1 GGAAAGG
555658 GGAAAGG
1 GGAAAGG
555665 GGAAAGG
1 GGAAAGG
*
555672 GGAAGGG
1 GGAAAGG
555679 GGAAA
1 GGAAA
555684 AAGAATTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (7 bp):
GGAAAGG
Found at i:555761 original size:20 final size:21
Alignment explanation
Indices: 555723--555763 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
555713 TTGCGGGTTT
**
555723 TTTTTTATAATAATTTTTTAA
1 TTTTTTATAATAAAATTTTAA
555744 TTTTTTA-AATAAAATTTTAA
1 TTTTTTATAATAAAATTTTAA
555764 AATTACCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTTTATAATAAAATTTTAA
Found at i:572436 original size:2 final size:2
Alignment explanation
Indices: 572429--572460 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
572419 GTATTTGTCA
572429 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
572461 TAATAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:576983 original size:31 final size:31
Alignment explanation
Indices: 576945--577015 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
576935 CAGTTACATC
576945 AGGGACCATATTACAAACGGACTAAATGTTG
1 AGGGACCATATTACAAACGGACTAAATGTTG
*
576976 AGGGACCATATTGCAAACGGACTAAATGTTG
1 AGGGACCATATTACAAACGGACTAAATGTTG
577007 -GGTGACCAT
1 AGG-GACCAT
577016 TACTATACTT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
30 2 0.05
31 36 0.95
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (31 bp):
AGGGACCATATTACAAACGGACTAAATGTTG
Found at i:588752 original size:29 final size:29
Alignment explanation
Indices: 588709--588784 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 29
588699 GGAGTAGGAG
* * *
588709 GGAGTGTATGTCGACCTACAAGATCGTCA
1 GGAGTGCATGACGACCTACAAGATCGCCA
* * *
588738 GGAGTGCATGGCGACCTACAAGGTCGCCC
1 GGAGTGCATGACGACCTACAAGATCGCCA
*
588767 GGAGGGCATGACGACCTA
1 GGAGTGCATGACGACCTA
588785 TGCTTGGGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.25, C:0.25, G:0.33, T:0.17
Consensus pattern (29 bp):
GGAGTGCATGACGACCTACAAGATCGCCA
Found at i:600217 original size:2 final size:2
Alignment explanation
Indices: 600212--600237 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
600202 TCTGTGTGTG
600212 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
600238 AGATGTTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:608327 original size:12 final size:12
Alignment explanation
Indices: 608310--608334 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
608300 ATCTGATATC
608310 GCCCATAATTCA
1 GCCCATAATTCA
608322 GCCCATAATTCA
1 GCCCATAATTCA
608334 G
1 G
608335 TTACCTCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.32, G:0.12, T:0.24
Consensus pattern (12 bp):
GCCCATAATTCA
Found at i:608973 original size:3 final size:3
Alignment explanation
Indices: 608965--609070 Score: 160
Period size: 3 Copynumber: 35.7 Consensus size: 3
608955 TTTTTATCCA
* *
608965 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT TAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
609013 TAA TAT TAT TAT TAT TAT TAT TTT TGT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
609061 T-T TAT TAT TA
1 TAT TAT TAT TA
609071 AATATATTAA
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
2 2 0.02
3 91 0.98
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:621892 original size:26 final size:24
Alignment explanation
Indices: 621838--621896 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
621828 TTATGCTTGA
*
621838 AAAAAAAAACAAAAAAAAAACAAA
1 AAAAAAAAAAAAAAAAAAAACAAA
* ***
621862 CAAAAAAAAAAAAAAAAAAATTGA
1 AAAAAAAAAAAAAAAAAAAACAAA
621886 AAAAAAAAAAA
1 AAAAAAAAAAA
621897 CGAAAAAAGG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.90, C:0.05, G:0.02, T:0.03
Consensus pattern (24 bp):
AAAAAAAAAAAAAAAAAAAACAAA
Found at i:621904 original size:1 final size:1
Alignment explanation
Indices: 621837--621896 Score: 66
Period size: 1 Copynumber: 60.0 Consensus size: 1
621827 ATTATGCTTG
* * * ***
621837 AAAAAAAAAACAAAAAAAAAACAAACAAAAAAAAAAAAAAAAAAATTGAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
621897 CGAAAAAAGG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 50 1.00
ACGTcount: A:0.90, C:0.05, G:0.02, T:0.03
Consensus pattern (1 bp):
A
Found at i:621904 original size:15 final size:14
Alignment explanation
Indices: 621837--621881 Score: 74
Period size: 15 Copynumber: 3.2 Consensus size: 14
621827 ATTATGCTTG
621837 AAAAAAAAAACAAA
1 AAAAAAAAAACAAA
621851 AAAAAAACAAACAAA
1 AAAAAAA-AAACAAA
621866 AAAAAAAAAA-AAA
1 AAAAAAAAAACAAA
621879 AAA
1 AAA
621882 TTGAAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.20
14 10 0.33
15 14 0.47
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:622275 original size:19 final size:20
Alignment explanation
Indices: 622238--622279 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
622228 TTCAAGTTCA
* *
622238 ATTTATTGGAGATTTAATTT
1 ATTTATTGGAAATTCAATTT
622258 ATTT-TTGGAAATTCAATTT
1 ATTTATTGGAAATTCAATTT
622277 ATT
1 ATT
622280 CTTTTCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.55
Consensus pattern (20 bp):
ATTTATTGGAAATTCAATTT
Found at i:623138 original size:52 final size:52
Alignment explanation
Indices: 623060--623576 Score: 916
Period size: 52 Copynumber: 9.9 Consensus size: 52
623050 TGAATATGCT
623060 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
623112 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
*
623164 CATAACATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
623216 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-GATCAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAGAA
*
623268 CATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTT-GATCAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAGAA
*
623320 CATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTGGACAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
* *
623372 CATATCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTGGACAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
623424 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTT-GATCAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGA-CAGAA
*
623476 CATAGCATCTTCTGGAAGTGTTCTTTAAGTTATCTGATCTGGTTGGACAGAA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
623528 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGAG-TGGACA
1 CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG-GTTGGACA
623577 AAATCAAGTA
Statistics
Matches: 452, Mismatches: 8, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
51 4 0.01
52 443 0.98
53 5 0.01
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.37
Consensus pattern (52 bp):
CATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGACAGAA
Found at i:624742 original size:119 final size:119
Alignment explanation
Indices: 624219--624970 Score: 1215
Period size: 119 Copynumber: 6.4 Consensus size: 119
624209 TCAAATCCAC
*
624219 TTGATGAATCATTCTTTTCCAGA-GAA-AGTTCATAATGAGAAGAA--C-TCATCTGAAGAAGGA
1 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
* * * *
624279 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAAGTCATCAT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCAT
624333 TTGATGGATCATTCTTTTCCAGA-GAA-AGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
1 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
*
624396 AGAAGAAGTTCATAATGAGAAGAACTTGTTTAACCTTTTGCTTGAATTCATCAAT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATC-AT
* *
624451 TTGATGGATCATTCATTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCATCATCTGAAGAAGGA
1 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
624516 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCA--AT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCAT
* *
624568 TTGATGGATCA-TCATTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCATCATCTGAAGAAGGA
1 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
* *
624632 AGAAGAAGTTCATAATGAGAAGAACTTGCTCAACCTTTTGCTTGAATTCATCAC
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCAT
624686 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
1 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
*
624751 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCAC
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCAT
624805 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
1 TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
*
624870 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTCATCAT
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCAT
* * * ** *
624924 TTGATAGAACA-TCATCCCCAGCA-GAA-AGTTCGTAATGAGAAGAACTC
1 TTGATGGATCATTCTTTTCCAG-AGGAAGAGTTCATAATGAGAAGAACTC
624971 ATCTGGAGAA
Statistics
Matches: 606, Mismatches: 22, Indels: 17
0.94 0.03 0.03
Matches are distributed among these distances:
114 43 0.07
116 103 0.17
117 95 0.16
118 46 0.08
119 234 0.39
120 85 0.14
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.29
Consensus pattern (119 bp):
TTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCAT
Found at i:624744 original size:235 final size:234
Alignment explanation
Indices: 624216--624970 Score: 1191
Period size: 235 Copynumber: 3.2 Consensus size: 234
624206 ATTTCAAATC
* *
624216 CACTTGATGAATCATTCTTTTCCAGAGAAAGTTCATAATGAGAAGAA--CTCATCTGAAGAAGGA
1 CACTTGATGGATCATTCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCTCATCTGAAGAAGGA
* * * *
624279 AGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGTTTAAAGTCATCATTTGATGGATCA
66 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCA-CATTTGATGGATCA
624344 TTCTTTTCCAGA-GAA-AGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTC
130 TTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTC
*
624407 ATAATGAGAAGAACTTGTTTAACCTTTTGCTTGAATTCAT
195 ATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCAT
*
624447 CAATTTGATGGATCATTCATTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCATCATCTGAAGA
1 C-ACTTGATGGATCATTCATTTCCAGA-GAA-AGTTCATAATGAGAAGAACTC-TCATCTGAAGA
624512 AGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCA-ATTTGATGGA
62 AGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCACATTTGATGGA
* *
624576 TCA-TCATTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCATCATCTGAAGAAGGAAGAAGAAG
127 TCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAG
*
624640 TTCATAATGAGAAGAACTTGCTCAACCTTTTGCTTGAATTCAT
192 TTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCAT
*
624683 CACTTGATGGATCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAA
1 CACTTGATGGATCATTCATTTCCAGA-GAA-AGTTCATAATGAGAAGAACTC-TCATCTGAAGAA
*
624748 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCATCACTTGATGGA
63 GGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCA-CATTTGATGGA
624813 TCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAG
127 TCATTCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAG
*
624878 TTCATAATGAGAAGAACTTGTTCAATCTTTTGCTTGAATTCAT
192 TTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCAT
* * * ** *
624921 CATTTGATAGAACA-TCATCCCCAGCAGAAAGTTCGTAATGAGAAGAACTC
1 CACTTGATGGATCATTCATTTCCAG-AGAAAGTTCATAATGAGAAGAACTC
624971 ATCTGGAGAA
Statistics
Matches: 486, Mismatches: 26, Indels: 19
0.92 0.05 0.04
Matches are distributed among these distances:
231 1 0.00
232 22 0.05
233 3 0.01
234 28 0.06
235 130 0.27
236 107 0.22
237 83 0.17
238 112 0.23
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (234 bp):
CACTTGATGGATCATTCATTTCCAGAGAAAGTTCATAATGAGAAGAACTCTCATCTGAAGAAGGA
AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCACATTTGATGGATCAT
TCTTTTCCAGAGGAAGAGTTCATAATGAGAAGAACTCGTCATCTGAAGAAGGAAGAAGAAGTTCA
TAATGAGAAGAACTTGTTCAACCTTTTGCTTGAATTCAT
Found at i:625134 original size:3 final size:3
Alignment explanation
Indices: 625126--625225 Score: 157
Period size: 3 Copynumber: 33.7 Consensus size: 3
625116 TTTTTATCCA
* * *
625126 TAT TAT TAT TAT TAT TAT TAT TAT TAA TAT TAT TAT TAT CAT TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
625174 TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
625221 TAT TA
1 TAT TA
625226 AATATATTAA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
2 2 0.02
3 86 0.98
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:625736 original size:15 final size:16
Alignment explanation
Indices: 625716--625745 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
625706 ACAGAATCGG
625716 AGAGAAAA-AAAAAAC
1 AGAGAAAAGAAAAAAC
625731 AGAGAAAAGAAAAAA
1 AGAGAAAAGAAAAAA
625746 ACAAACTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (16 bp):
AGAGAAAAGAAAAAAC
Found at i:630259 original size:2 final size:2
Alignment explanation
Indices: 630252--630295 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
630242 AATGCAAAGC
630252 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
630294 AT
1 AT
630296 GAATTAAATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:643675 original size:19 final size:19
Alignment explanation
Indices: 643637--643732 Score: 75
Period size: 19 Copynumber: 4.7 Consensus size: 19
643627 GATTCACAAC
* *
643637 GCGATTGTGAAAAATATGTT
1 GCGATAGTG-AAAATGTGTT
*
643657 GCGATAGTTAAAATGTGTT
1 GCGATAGTGAAAATGTGTT
*
643676 GCGAGAGTTTGAAAAACGTGTTGTT
1 GCGATAG--TG-AAAA--TG-TGTT
*
643701 GCGATAGTGAAAAAGTGTT
1 GCGATAGTGAAAATGTGTT
*
643720 GCAATAGTGAAAA
1 GCGATAGTGAAAA
643733 ATCTAAAATA
Statistics
Matches: 62, Mismatches: 8, Indels: 13
0.75 0.10 0.16
Matches are distributed among these distances:
19 31 0.50
20 8 0.13
21 1 0.02
22 8 0.13
23 2 0.03
24 2 0.03
25 10 0.16
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.30
Consensus pattern (19 bp):
GCGATAGTGAAAATGTGTT
Found at i:644243 original size:61 final size:63
Alignment explanation
Indices: 644139--644276 Score: 226
Period size: 61 Copynumber: 2.2 Consensus size: 63
644129 TTTTGGATTG
644139 GACTATCGCAACGCGAACTTTGACGACTATCGCAACAAATTTGGAAAATCGCAACGCGAACTTC
1 GACTATCGCAACGCGAACTTTGA-GACTATCGCAACAAATTTGGAAAATCGCAACGCGAACTTC
* * *
644203 GACTATCGCAACGTGAAC-TTG-GACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTG
1 GACTATCGCAACGCGAACTTTGAGACTATCGCAACAAATTTGGAAAATCGCAACGCGAACTTC
644264 GACTATCGCAACG
1 GACTATCGCAACG
644277 AATTTGGAAA
Statistics
Matches: 71, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
61 51 0.72
63 3 0.04
64 17 0.24
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.20
Consensus pattern (63 bp):
GACTATCGCAACGCGAACTTTGAGACTATCGCAACAAATTTGGAAAATCGCAACGCGAACTTC
Found at i:644251 original size:40 final size:40
Alignment explanation
Indices: 644207--644354 Score: 269
Period size: 40 Copynumber: 3.7 Consensus size: 40
644197 AACTTCGACT
*
644207 ATCGCAACGTGAACTTGGACTATCGCAACGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAA
644247 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAA
* *
644287 ATCGCAACGCGAACTTTGACTATCGCAACAAATTTGGAAA
1 ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAA
644327 ATCGCAACGCGAACTTGGACTATCGCAA
1 ATCGCAACGCGAACTTGGACTATCGCAA
644355 AATCGCGTTG
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 104 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (40 bp):
ATCGCAACGCGAACTTGGACTATCGCAACGAATTTGGAAA
Found at i:644315 original size:61 final size:60
Alignment explanation
Indices: 644139--644295 Score: 199
Period size: 61 Copynumber: 2.5 Consensus size: 60
644129 TTTTGGATTG
** *
644139 GACTATCGCAACGCGAACTTTGACGACTATCGCAACAAATTTGGAAAATCGCAACGCGAACTTC
1 GACTATCGCAACG-GAAC-TTG--GAAAATCGCAACGAATTTGGAAAATCGCAACGCGAACTTC
** *
644203 GACTATCGCAACGTGAACTTGGACTATCGCAACGAATTTGGAAAATCGCAACGCGAACTTG
1 GACTATCGCAACG-GAACTTGGAAAATCGCAACGAATTTGGAAAATCGCAACGCGAACTTC
*
644264 GACTATCGCAAC-GAATTTGGAAAATCGCAACG
1 GACTATCGCAACGGAACTTGGAAAATCGCAACG
644296 CGAACTTTGA
Statistics
Matches: 87, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
59 17 0.20
61 50 0.57
63 3 0.03
64 17 0.20
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.20
Consensus pattern (60 bp):
GACTATCGCAACGGAACTTGGAAAATCGCAACGAATTTGGAAAATCGCAACGCGAACTTC
Found at i:644419 original size:20 final size:20
Alignment explanation
Indices: 644396--644468 Score: 78
Period size: 20 Copynumber: 3.6 Consensus size: 20
644386 AAATTAGAGT
644396 TCGCGTTGCGATAGTCAGAA
1 TCGCGTTGCGATAGTCAGAA
** *
644416 TCGCAATGCGAT--TCTGTATTA
1 TCGCGTTGCGATAGTCAG-A--A
644437 TCGCGTTGCGATAGTCAGAA
1 TCGCGTTGCGATAGTCAGAA
644457 TCGCGTTGCGAT
1 TCGCGTTGCGAT
644469 TTTGTATTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
18 3 0.07
19 1 0.02
20 23 0.55
21 11 0.26
22 1 0.02
23 3 0.07
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.30
Consensus pattern (20 bp):
TCGCGTTGCGATAGTCAGAA
Found at i:644446 original size:21 final size:21
Alignment explanation
Indices: 644422--644490 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
644412 AGAATCGCAA
644422 TGCGATTCTGTATTATCGCGT
1 TGCGATTCTGTATTATCGCGT
*
644443 TGCGATAGTCAG-A--ATCGCGT
1 TGCGAT--TCTGTATTATCGCGT
*
644463 TGCGATTTTGTATTATCGCGT
1 TGCGATTCTGTATTATCGCGT
*
644484 TGAGATT
1 TGCGATT
644491 TACATATTCG
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
18 2 0.05
19 1 0.03
20 13 0.33
21 19 0.49
22 1 0.03
23 3 0.08
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (21 bp):
TGCGATTCTGTATTATCGCGT
Found at i:644453 original size:41 final size:41
Alignment explanation
Indices: 644396--644485 Score: 153
Period size: 41 Copynumber: 2.2 Consensus size: 41
644386 AAATTAGAGT
644396 TCGCGTTGCGATAGTCAGAATCGCAATGCGATTCTGTATTA
1 TCGCGTTGCGATAGTCAGAATCGCAATGCGATTCTGTATTA
** *
644437 TCGCGTTGCGATAGTCAGAATCGCGTTGCGATTTTGTATTA
1 TCGCGTTGCGATAGTCAGAATCGCAATGCGATTCTGTATTA
644478 TCGCGTTG
1 TCGCGTTG
644486 AGATTTACAT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.20, C:0.19, G:0.27, T:0.34
Consensus pattern (41 bp):
TCGCGTTGCGATAGTCAGAATCGCAATGCGATTCTGTATTA
Found at i:644578 original size:19 final size:19
Alignment explanation
Indices: 644554--644590 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
644544 TGCAATACTG
*
644554 GAGATCGCGTTGCGATTTA
1 GAGATCGCATTGCGATTTA
644573 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
644591 TGTTGGTCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:645532 original size:23 final size:21
Alignment explanation
Indices: 645491--645536 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
645481 AGAATTAATA
645491 TTATTTTAATAGTAATATTAG
1 TTATTTTAATAGTAATATTAG
645512 TTATTTTGAATA-T-ATATTA-
1 TTATTTT-AATAGTAATATTAG
645531 TTATTT
1 TTATTT
645537 AGTTTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 6 0.25
21 8 0.33
22 4 0.17
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.59
Consensus pattern (21 bp):
TTATTTTAATAGTAATATTAG
Found at i:647490 original size:29 final size:30
Alignment explanation
Indices: 647458--647517 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
647448 CGTAAACAGT
*
647458 CACAACAATCCTCTCAACCCG-AAAAATCA
1 CACAACAAACCTCTCAACCCGTAAAAATCA
* * *
647487 CACAACAAACTTTTCAACCCGTAAATATCA
1 CACAACAAACCTCTCAACCCGTAAAAATCA
647517 C
1 C
647518 CCGGCAATCC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 18 0.69
30 8 0.31
ACGTcount: A:0.43, C:0.35, G:0.03, T:0.18
Consensus pattern (30 bp):
CACAACAAACCTCTCAACCCGTAAAAATCA
Found at i:650437 original size:29 final size:29
Alignment explanation
Indices: 650404--650459 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 29
650394 GCCTTTCTGC
650404 AAAGGGTGT-TAGATCAGG-AAATATATATG
1 AAAGGGTGTCT-GAT-AGGTAAATATATATG
650433 AAAGGGTGTCTGATAGGTAAATATATA
1 AAAGGGTGTCTGATAGGTAAATATATA
650460 ACGAAAAGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 3 0.12
29 21 0.84
30 1 0.04
ACGTcount: A:0.41, C:0.04, G:0.27, T:0.29
Consensus pattern (29 bp):
AAAGGGTGTCTGATAGGTAAATATATATG
Found at i:651780 original size:28 final size:28
Alignment explanation
Indices: 651749--651802 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
651739 CGTAGGACCA
651749 ATATGTCCCGTAGGACCACGTAGAACAT
1 ATATGTCCCGTAGGACCACGTAGAACAT
*
651777 ATATGTCCCGTAGGACCGCGTAGAAC
1 ATATGTCCCGTAGGACCACGTAGAAC
651803 CCTCGACTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (28 bp):
ATATGTCCCGTAGGACCACGTAGAACAT
Found at i:659499 original size:11 final size:11
Alignment explanation
Indices: 659483--659509 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
659473 AATTGATCTT
659483 ATTAAACCTTA
1 ATTAAACCTTA
659494 ATTAAACCTTA
1 ATTAAACCTTA
659505 ATTAA
1 ATTAA
659510 GAAATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (11 bp):
ATTAAACCTTA
Found at i:660274 original size:21 final size:22
Alignment explanation
Indices: 660245--660285 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
660235 ATGATTTTAA
*
660245 AAAATTAAAATATAATATATAC
1 AAAATTAAAAGATAATATATAC
*
660267 AAAA-TAAAAGATACTATAT
1 AAAATTAAAAGATAATATAT
660286 GATTATGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATTAAAAGATAATATATAC
Found at i:663452 original size:21 final size:21
Alignment explanation
Indices: 663423--663475 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
663413 ATTCTGACTA
663423 TCGCATTGCGATTTCCCAAAT
1 TCGCATTGCGATTTCCCAAAT
* * *
663444 TCGCGTTGCGATTTTCCTAAT
1 TCGCATTGCGATTTCCCAAAT
*
663465 TCGCAATGCGA
1 TCGCATTGCGA
663476 ATACGTAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (21 bp):
TCGCATTGCGATTTCCCAAAT
Found at i:663490 original size:20 final size:20
Alignment explanation
Indices: 663465--663537 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
663455 TTTTCCTAAT
663465 TCGCAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
* *
663485 TCGCAACGCGATTACGTAAA
1 TCGCAATGCGAATACGTAAA
**
663505 TCATAATGCGAATACGTAAA
1 TCGCAATGCGAATACGTAAA
663525 TCGCAATGCGAAT
1 TCGCAATGCGAAT
663538 CTGACTATCG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (20 bp):
TCGCAATGCGAATACGTAAA
Found at i:664156 original size:21 final size:20
Alignment explanation
Indices: 664078--664149 Score: 110
Period size: 20 Copynumber: 3.5 Consensus size: 20
664068 TTCTAAACTT
*
664078 AAAATCGCAACATGAAAATG
1 AAAATCGCAACACGAAAATG
664098 AAAATCGCAACACGAAAATG
1 AAAATCGCAACACGAAAATG
664118 AAAATCGCAACGA-GAGAAATG
1 AAAATCGCAAC-ACGA-AAATG
664139 AAAATCGCAAC
1 AAAATCGCAAC
664150 GAGAGAATCG
Statistics
Matches: 49, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
20 32 0.65
21 17 0.35
ACGTcount: A:0.54, C:0.18, G:0.17, T:0.11
Consensus pattern (20 bp):
AAAATCGCAACACGAAAATG
Found at i:664194 original size:19 final size:19
Alignment explanation
Indices: 664155--664195 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
664145 GCAACGAGAG
**
664155 AATCGCAACGCGAAATTAA
1 AATCGCAACGCGAAACCAA
664174 AATCGCAACGCGAAACCAA
1 AATCGCAACGCGAAACCAA
664193 AAT
1 AAT
664196 TGCATTGCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.24, G:0.15, T:0.12
Consensus pattern (19 bp):
AATCGCAACGCGAAACCAA
Found at i:664280 original size:20 final size:19
Alignment explanation
Indices: 664200--664292 Score: 150
Period size: 19 Copynumber: 4.8 Consensus size: 19
664190 CAAAATTGCA
664200 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
* *
664219 TTGCGATTTTAATTTTGCG
1 TTGCGATTTTCATTTCGCG
664238 TTGCGATTTTCATTTCGCG
1 TTGCGATTTTCATTTCGCG
*
664257 TTGCGATTTTCATTCTCTCG
1 TTGCGATTTTCATT-TCGCG
664277 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
664293 AACCAAAAGA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
19 50 0.74
20 18 0.26
ACGTcount: A:0.12, C:0.19, G:0.18, T:0.51
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCG
Found at i:666170 original size:94 final size:93
Alignment explanation
Indices: 665979--666354 Score: 598
Period size: 94 Copynumber: 4.1 Consensus size: 93
665969 TAGATTGCTT
* *
665979 AGTAAATTTATTCGGTTGCTGCCAATACTGCTAAAC--TGT-TT-ATTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
666040 ATTTGTCTTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTC-TTTGTTTTGTCTTTTGGTTGA
* * *
666069 AGTAAATTTATTCGGTTGCTGTCAATTCTGCTAAACTGTGTATTCTTTAACATTGTAAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
666134 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
*
666163 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
666228 ATTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTG-A
* * * * *
666257 AGTAAATTTGTTCGTTTGCTGTCAATTCTGCTAAACTGTGTATTCTTTAATACTCTGAAGTTAGT
1 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
666322 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
66 ATTTGTCTTTGTTTTGTCTTTTGGTTGA
666350 AGTAA
1 AGTAA
666355 TGCAATACAT
Statistics
Matches: 268, Mismatches: 13, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
90 34 0.13
92 3 0.01
93 28 0.10
94 203 0.76
ACGTcount: A:0.22, C:0.12, G:0.19, T:0.48
Consensus pattern (93 bp):
AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAGTTAGT
ATTTGTCTTTGTTTTGTCTTTTGGTTGA
Found at i:666494 original size:20 final size:20
Alignment explanation
Indices: 666471--666508 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
666461 TGAGAGAATG
666471 AAAATCACAACGCGAAACCA
1 AAAATCACAACGCGAAACCA
*
666491 AAAATCGCAACGCGAAAC
1 AAAATCACAACGCGAAAC
666509 TATAATCGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.53, C:0.29, G:0.13, T:0.05
Consensus pattern (20 bp):
AAAATCACAACGCGAAACCA
Found at i:666594 original size:20 final size:19
Alignment explanation
Indices: 666514--666640 Score: 129
Period size: 19 Copynumber: 6.8 Consensus size: 19
666504 GAAACTATAA
666514 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
666533 TCGCATTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
666547 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
666566 TCGCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
*
666585 CTCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
* **
666605 TCGGGTTGCGATAGTCATTTT
1 TCGCGTTGCGATTTTCA--TT
*
666626 TCACGTTGCGATTTT
1 TCGCGTTGCGATTTT
666641 AAGTTCCAGA
Statistics
Matches: 87, Mismatches: 13, Indels: 14
0.76 0.11 0.12
Matches are distributed among these distances:
14 9 0.10
16 3 0.03
17 3 0.03
19 41 0.47
20 18 0.21
21 13 0.15
ACGTcount: A:0.12, C:0.21, G:0.20, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:666597 original size:39 final size:37
Alignment explanation
Indices: 666517--666640 Score: 139
Period size: 39 Copynumber: 3.3 Consensus size: 37
666507 ACTATAATCG
*
666517 CGTTGCGATTTTCATTTCGCATTGCG----ATTCTCT
1 CGTTGCGATTTTCATTTCGCGTTGCGATTCATTCTCT
666550 CGTTGCGATTTTCATTTCGCGTTGCGATTTTCATTCTCT
1 CGTTGCGATTTTCATTTCGCGTTGCGA--TTCATTCTCT
* * *
666589 CGTTGCGATTTTCATTTCGGGTTGCGATAGTCATTTTTCA
1 CGTTGCGATTTTCATTTCGCGTTGCGAT--TCA-TTCTCT
666629 CGTTGCGATTTT
1 CGTTGCGATTTT
666641 AAGTTCCAGA
Statistics
Matches: 78, Mismatches: 4, Indels: 11
0.84 0.04 0.12
Matches are distributed among these distances:
33 25 0.32
37 1 0.01
39 36 0.46
40 16 0.21
ACGTcount: A:0.12, C:0.21, G:0.20, T:0.47
Consensus pattern (37 bp):
CGTTGCGATTTTCATTTCGCGTTGCGATTCATTCTCT
Found at i:667117 original size:21 final size:21
Alignment explanation
Indices: 667093--667159 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
667083 TCATTCCTCG
667093 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
667114 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
667135 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
667156 AGAG
1 AGAG
667160 CCCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:667120 original size:42 final size:42
Alignment explanation
Indices: 667041--667159 Score: 98
Period size: 42 Copynumber: 2.8 Consensus size: 42
667031 GACTCGCCTG
* * * * * * * *
667041 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAAAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
667083 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
667125 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
667160 CCCGATTCAC
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
41 4 0.06
42 57 0.90
43 2 0.03
ACGTcount: A:0.24, C:0.36, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:668287 original size:14 final size:14
Alignment explanation
Indices: 668270--668305 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
668260 TTGATTGTAT
668270 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
668284 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
668298 TGATTTGT
1 TGATTTGT
668306 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:668428 original size:19 final size:19
Alignment explanation
Indices: 668421--668457 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
668411 TATCGCAATG
668421 CGAAATGAAAATCGCAACA
1 CGAAATGAAAATCGCAACA
668440 CGAAATGAAAATCGCAAC
1 CGAAATGAAAATCGCAAC
668458 GAGGGAATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.51, C:0.22, G:0.16, T:0.11
Consensus pattern (19 bp):
CGAAATGAAAATCGCAACA
Done.