genome.fa.s3408.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003408.1 Hibiscus syriacus cultivar Beakdansim tig00007180_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58143

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3565--3652	18	4.9	18	100	0	176	15	22	34	27	1.95
4620--4686	23	2.9	23	78	14	66	46	4	2	46	1.38
7189--7228	20	2.0	20	100	0	80	40	15	15	30	1.87
7871--7910	21	1.9	22	90	10	66	12	10	40	37	1.77
8012--8106	21	4.7	20	87	5	127	33	24	25	16	1.96
8141--8183	22	1.9	23	90	4	70	20	20	32	25	1.97
8127--8225	21	4.8	20	82	13	119	22	20	35	22	1.96
8305--8364	29	2.0	29	90	6	93	43	15	6	35	1.72
9851--9920	30	2.3	30	88	9	99	47	14	4	34	1.64
9862--9921	29	2.0	31	93	6	106	43	16	6	33	1.74
14641--14698	25	2.3	25	77	16	66	44	0	0	55	0.99
15007--15060	27	2.0	27	88	0	81	46	0	0	53	1.00
15012--15068	10	6.3	9	76	11	55	50	0	0	49	1.00
16439--16513	29	2.6	29	79	12	82	50	18	1	29	1.55
16443--16508	30	2.2	31	83	8	82	57	15	1	25	1.47
19442--19584	32	4.5	32	78	0	151	32	17	13	37	1.88
24476--24503	14	2.0	14	100	0	56	85	0	0	14	0.59
25872--26087	44	4.9	44	75	1	164	31	18	16	33	1.93
26386--26477	42	2.2	42	86	0	121	32	17	20	29	1.96
26426--26735	129	2.4	128	85	2	395	29	19	19	31	1.97
30163--30214	22	2.3	21	81	12	59	44	0	1	53	1.11
32986--33161	93	1.9	93	92	2	300	32	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34981--35028	19	2.5	20	82	3	62	52	6	12	29	1.63
36214--36264	23	2.2	24	86	10	70	45	29	0	25	1.54
36400--36450	14	3.5	15	84	5	61	47	1	3	47	1.32
37072--37098	2	13.5	2	100	0	54	51	0	0	48	1.00
38069--38117	25	1.9	26	84	12	66	30	2	2	65	1.15
43786--43810	12	2.1	12	100	0	50	24	0	52	24	1.48

Tables:   1

The End!