Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01003409.1 Hibiscus syriacus cultivar Beakdansim tig00007181_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 462136
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 1 of 3
Found at i:9114 original size:20 final size:20
Alignment explanation
Indices: 9077--9115 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9067 AGAGCTCATA
* *
9077 TAGGATCATATAGATGCATT
1 TAGGAGCATAAAGATGCATT
*
9097 TAGGAGCATAAAGTTGCAT
1 TAGGAGCATAAAGATGCAT
9116 GTGGTGAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (20 bp):
TAGGAGCATAAAGATGCATT
Found at i:12297 original size:54 final size:54
Alignment explanation
Indices: 12238--12697 Score: 708
Period size: 54 Copynumber: 8.5 Consensus size: 54
12228 ATAAATATTT
* * *
12238 ATGAATTTCGT-GGTTAGTACACATAGTGCCTATACGGTTGTTCATCAACATATG
1 ATGAATTTCGTGGGTT-GCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* *
12292 ATGAATTTTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATTAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
*
12346 ATGAATTTTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* * * * * *
12400 ATGAATTCCATGAGTTGCACAGTTAGTGCCTATAAGGTCGTTTATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
12454 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
12508 ATGAA-TTCTGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
1 ATGAATTTC-GTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
** * *
12562 ATGAATTTTTTGGGTTGCACACTTAGTACCTATACAGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* *
12616 ATGAATTTCATGGGTTGTACACTTAGTGCCTATACGGTCGTTCATCAACATATG
1 ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
* *
12670 ATGAATTCCTTGGGTTGCACACTTAGTG
1 ATGAATTTCGTGGGTTGCACACTTAGTG
12698 ACTAGAGTAC
Statistics
Matches: 372, Mismatches: 31, Indels: 6
0.91 0.08 0.01
Matches are distributed among these distances:
53 3 0.01
54 363 0.98
55 6 0.02
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (54 bp):
ATGAATTTCGTGGGTTGCACACTTAGTGCCTATACGGTCGTTCATCAACATATG
Found at i:16362 original size:25 final size:25
Alignment explanation
Indices: 16334--16392 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
16324 CTTTGTGACA
*
16334 AAGAGTGGTCATAAGGAAGAGGAGG
1 AAGATTGGTCATAAGGAAGAGGAGG
16359 AAGATTGGTCATAAGGAAGAGGAGG
1 AAGATTGGTCATAAGGAAGAGGAGG
16384 AAGATTGGT
1 AAGATTGGT
16393 GTAGATTACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.41, T:0.17
Consensus pattern (25 bp):
AAGATTGGTCATAAGGAAGAGGAGG
Found at i:16846 original size:2 final size:2
Alignment explanation
Indices: 16834--16878 Score: 81
Period size: 2 Copynumber: 22.5 Consensus size: 2
16824 AGGCAAACTA
*
16834 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
16876 AT A
1 AT A
16879 ACCAAATGGT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:33569 original size:25 final size:25
Alignment explanation
Indices: 33541--33599 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
33531 CTTTGTGACA
*
33541 AAGAGTGGTCATAAGGAAGAGGAGG
1 AAGATTGGTCATAAGGAAGAGGAGG
33566 AAGATTGGTCATAAGGAAGAGGAGG
1 AAGATTGGTCATAAGGAAGAGGAGG
33591 AAGATTGGT
1 AAGATTGGT
33600 GTAGATTACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.41, T:0.17
Consensus pattern (25 bp):
AAGATTGGTCATAAGGAAGAGGAGG
Found at i:34686 original size:2 final size:2
Alignment explanation
Indices: 34679--34712 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
34669 AGGCAAACTA
34679 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
34713 ACCAAATGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:51372 original size:25 final size:25
Alignment explanation
Indices: 51344--51402 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
51334 CTTTGTGACA
*
51344 AAGAGTGGTCATAAGGAAGAGGAGG
1 AAGATTGGTCATAAGGAAGAGGAGG
51369 AAGATTGGTCATAAGGAAGAGGAGG
1 AAGATTGGTCATAAGGAAGAGGAGG
51394 AAGATTGGT
1 AAGATTGGT
51403 GTAGATTACT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.39, C:0.03, G:0.41, T:0.17
Consensus pattern (25 bp):
AAGATTGGTCATAAGGAAGAGGAGG
Found at i:52489 original size:2 final size:2
Alignment explanation
Indices: 52482--52519 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
52472 AGGCAAACTA
52482 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
52520 ACCAAATGGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:67536 original size:27 final size:27
Alignment explanation
Indices: 67505--67572 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
67495 TCTATTTACA
67505 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
67532 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
67559 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
67573 ATTCCTACAC
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
25 9 0.22
27 32 0.78
ACGTcount: A:0.41, C:0.16, G:0.12, T:0.31
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:71195 original size:27 final size:27
Alignment explanation
Indices: 71159--71226 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
71149 TCTATTTACA
71159 AAATCATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
*
71186 AAATTATATCTCTATAGGAATGGTAAC
1 AAATCATATCTCTATAGGAATGGTAAC
71213 AAATC--ATCTCTATA
1 AAATCATATCTCTATA
71227 ATTCCTACAG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 9 0.23
27 30 0.77
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (27 bp):
AAATCATATCTCTATAGGAATGGTAAC
Found at i:73485 original size:2 final size:2
Alignment explanation
Indices: 73478--73544 Score: 134
Period size: 2 Copynumber: 33.5 Consensus size: 2
73468 TTTCTATAAC
73478 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
73520 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
73545 TTCTTCATAT
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 65 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:73729 original size:21 final size:20
Alignment explanation
Indices: 73643--73800 Score: 86
Period size: 21 Copynumber: 7.8 Consensus size: 20
73633 AAATGACCAA
**
73643 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
73662 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
73682 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
73702 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * *
73723 GAAAATCGCAATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
73744 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
73764 CAAGAATCGCAACGCGAATAT
1 CAA-AATCGCAACGCGATTTT
*
73785 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
73801 ACACATAAAT
Statistics
Matches: 104, Mismatches: 29, Indels: 11
0.72 0.20 0.08
Matches are distributed among these distances:
19 16 0.15
20 42 0.40
21 46 0.44
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:73829 original size:20 final size:20
Alignment explanation
Indices: 73768--73996 Score: 230
Period size: 20 Copynumber: 11.4 Consensus size: 20
73758 GATTTTCAAG
* ** *
73768 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
73788 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
73808 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
73828 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
73848 AATAGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
73868 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
73888 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
73908 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
73928 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
73948 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
73968 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
73988 AATCACAAC
1 AATCGCAAC
73997 ACTGAAATTT
Statistics
Matches: 175, Mismatches: 28, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
19 2 0.01
20 171 0.98
21 2 0.01
ACGTcount: A:0.37, C:0.26, G:0.18, T:0.19
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:74728 original size:24 final size:24
Alignment explanation
Indices: 74689--74735 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
74679 AAATTTGGTC
74689 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
74713 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
74736 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:74927 original size:12 final size:12
Alignment explanation
Indices: 74910--74934 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
74900 ATATAATCAT
74910 GAAGAAGAAAAA
1 GAAGAAGAAAAA
74922 GAAGAAGAAAAA
1 GAAGAAGAAAAA
74934 G
1 G
74935 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:77323 original size:72 final size:72
Alignment explanation
Indices: 77230--77463 Score: 297
Period size: 72 Copynumber: 3.3 Consensus size: 72
77220 GCAACGAGAG
77230 AATCGCAATGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 AATCGCAATGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
77295 AAATGAA
66 AAATGAA
* *
77302 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGCAATGCGGAAATGAAAATCGCAATGC
1 AATCGCAATGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAAAATCGCAATGC
77366 GAAATGAA
65 GAAATGAA
* * * * *
77374 AATCGCAACGAGAGAATCG-CAATGCGAA-ATGAAAATCGCAATGC-GAAATGAAAATCGCAA--
1 AATCGCAATGCGA-AAT-GAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAATG
*
77434 CG--A-GAG
64 CGAAATGAA
77440 AATCGCAATGCGGAAATGAAAATC
1 AATCGCAATGC-GAAATGAAAATC
77464 GCAATGCGAA
Statistics
Matches: 142, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
65 1 0.01
66 17 0.12
67 3 0.02
69 2 0.01
71 17 0.12
72 92 0.65
73 9 0.06
74 1 0.01
ACGTcount: A:0.46, C:0.18, G:0.22, T:0.14
Consensus pattern (72 bp):
AATCGCAATGCGAAATGAAAATCCCAACATGAAAATCGCAATGCGGAAATGAAAATCGCAATGCG
AAATGAA
Found at i:77351 original size:53 final size:52
Alignment explanation
Indices: 77216--77485 Score: 415
Period size: 53 Copynumber: 5.1 Consensus size: 52
77206 CGGAAATTAC
*
77216 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAA--C---ATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
*
77263 AATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAA--C-G--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
77321 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAA
77374 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
77426 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCGCAATGCGAAATGAA
77479 AATCGCA
1 AATCGCA
77486 TTGCGATTCT
Statistics
Matches: 207, Mismatches: 3, Indels: 20
0.90 0.01 0.09
Matches are distributed among these distances:
47 8 0.04
49 1 0.00
50 1 0.00
52 66 0.32
53 115 0.56
55 2 0.01
56 1 0.00
58 13 0.06
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.14
Consensus pattern (52 bp):
AATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:77491 original size:72 final size:68
Alignment explanation
Indices: 77197--77490 Score: 276
Period size: 72 Copynumber: 4.2 Consensus size: 68
77187 GCATTTGACT
** * * *
77197 ATCGCAACACGGAAATTACAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCCCAAC-ATG
1 ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGATG
77261 AAA
66 AAA
*
77264 ATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA
1 ATCGCAATGCGGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAA
*
77329 CGA-GAGA
61 CGATGAAA
* * * * *
77336 ATCGCAATGCGGAAATGAAAATCGCAATGCGA-AAT-GAAAAT-CGCAACGAGAGAATCGCAATG
1 ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCG-CAATGCGAAATGA-A-AATCGCAA--
77398 CGAAATGAAA
61 CG--ATGAAA
77408 ATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCG
1 ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCGCAA--CG
77472 AAATGAAA
63 --ATGAAA
*
77480 ATCGCATTGCG
1 ATCGCAATGCG
77491 ATTCTCTCGT
Statistics
Matches: 189, Mismatches: 19, Indels: 32
0.79 0.08 0.13
Matches are distributed among these distances:
65 7 0.04
66 7 0.04
67 33 0.17
69 4 0.02
70 1 0.01
71 21 0.11
72 107 0.57
73 4 0.02
74 5 0.03
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.14
Consensus pattern (68 bp):
ATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAAATGAAAATCGCAACGATG
AAA
Found at i:77505 original size:105 final size:105
Alignment explanation
Indices: 77216--77485 Score: 426
Period size: 105 Copynumber: 2.6 Consensus size: 105
77206 CGGAAATTAC
*
77216 AATCGCAACGAGAGAATCGCAATGC-GAAATGAAAATCCCAA--C---ATGAAAATCGCAATGCG
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAA--C-
*
77275 GAAATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
63 G--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
77321 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAG
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAG
77386 AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
66 AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
77426 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCA
1 AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCA
77486 TTGCGATTCT
Statistics
Matches: 157, Mismatches: 2, Indels: 12
0.92 0.01 0.07
Matches are distributed among these distances:
105 125 0.80
106 16 0.10
108 2 0.01
109 1 0.01
111 13 0.08
ACGTcount: A:0.46, C:0.18, G:0.23, T:0.14
Consensus pattern (105 bp):
AATCGCAACGAGAGAATCGCAATGCGGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAG
AGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
Found at i:77525 original size:20 final size:19
Alignment explanation
Indices: 77500--77579 Score: 98
Period size: 20 Copynumber: 4.4 Consensus size: 19
77490 GATTCTCTCG
77500 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
77520 TTGCGATTTTCATTTCCGCA
1 TTGCGATTTTCATTT-CGCA
*
77540 TTGCGA--TTC-TCTCG--
1 TTGCGATTTTCATTTCGCA
77554 TTGCGATTTTCATTTCGCA
1 TTGCGATTTTCATTTCGCA
77573 TTGCGAT
1 TTGCGAT
77580 AGTCATTTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
14 6 0.11
16 5 0.09
17 6 0.11
18 3 0.06
19 7 0.13
20 26 0.49
ACGTcount: A:0.14, C:0.24, G:0.17, T:0.45
Consensus pattern (19 bp):
TTGCGATTTTCATTTCGCA
Found at i:77705 original size:14 final size:14
Alignment explanation
Indices: 77686--77722 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
77676 CATCAATTAC
77686 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
77700 ACAAATCATCTTTT
1 ACAAATCAACTTTT
77714 ACAAATCAA
1 ACAAATCAA
77723 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:79688 original size:19 final size:18
Alignment explanation
Indices: 79661--79765 Score: 101
Period size: 19 Copynumber: 5.8 Consensus size: 18
79651 ACACGAAACT
79661 TAAAATCGCAACGCGAAA
1 TAAAATCGCAACGCGAAA
*
79679 TAAGAATCGCAACGAGAAA
1 TAA-AATCGCAACGCGAAA
*
79698 CCAAAATCGCAACGCGAAA
1 -TAAAATCGCAACGCGAAA
79717 TGAAAATCGCAA--CG--A
1 T-AAAATCGCAACGCGAAA
* * *
79732 CAGAATCGCAATGCGAAA
1 TAAAATCGCAACGCGAAA
79750 TGAAAATCGCAACGCG
1 T-AAAATCGCAACGCG
79766 TTGCGATTCT
Statistics
Matches: 70, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
14 9 0.13
15 1 0.01
16 2 0.03
17 2 0.03
18 4 0.06
19 50 0.71
20 2 0.03
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (18 bp):
TAAAATCGCAACGCGAAA
Found at i:79783 original size:14 final size:14
Alignment explanation
Indices: 79764--79820 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
79754 AATCGCAACG
*
79764 CGTTGCGATTCTGT
1 CGTTGCGATTCTCT
*
79778 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
79797 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
79811 CGTTGCGATT
1 CGTTGCGATT
79821 TTAAGTTTCG
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 20 0.57
16 3 0.09
17 3 0.09
19 9 0.26
ACGTcount: A:0.09, C:0.23, G:0.25, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:79804 original size:33 final size:34
Alignment explanation
Indices: 79762--79838 Score: 120
Period size: 33 Copynumber: 2.3 Consensus size: 34
79752 AAAATCGCAA
* *
79762 CGCGTTGCGATTCTGTCGTTGCGATTTTCA-TTT
1 CGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTT
79795 CGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTT
1 CGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTT
*
79829 CGTGTTGCGA
1 CGCGTTGCGA
79839 AAGTAAACTA
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
33 28 0.70
34 12 0.30
ACGTcount: A:0.10, C:0.21, G:0.26, T:0.43
Consensus pattern (34 bp):
CGCGTTGCGATTCTCTCGTTGCGATTTTAAGTTT
Found at i:80095 original size:93 final size:93
Alignment explanation
Indices: 79936--80251 Score: 623
Period size: 93 Copynumber: 3.4 Consensus size: 93
79926 TCAGGGTATT
79936 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
80001 TACTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
80029 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
80094 TACTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
80122 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
80187 TACTATTTCACAGTGTTAAAGAATACAC
66 TACTATTTCACAGTGTTAAAGAATACAC
*
80215 AGTTTAGCAGAATTGGCAGCAACCGAATAAATTTACT
1 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACT
80252 AAGCAATCTA
Statistics
Matches: 222, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
93 222 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (93 bp):
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACAC
Found at i:81968 original size:20 final size:20
Alignment explanation
Indices: 81937--82033 Score: 100
Period size: 20 Copynumber: 5.2 Consensus size: 20
81927 TTTTGGTTGA
81937 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
***
81957 AATGACTCTCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
81977 AAATGAAAATCGCAAC--GAG
1 -AATGAAAATCGCAACGAGAG
*
81996 -A-G--AATCGCAACGCGA-
1 AATGAAAATCGCAACGAGAG
82011 AATGAAAATCGCAACGAGAG
1 AATGAAAATCGCAACGAGAG
82031 AAT
1 AAT
82034 CGCAACGCGA
Statistics
Matches: 62, Mismatches: 7, Indels: 16
0.73 0.08 0.19
Matches are distributed among these distances:
14 9 0.15
16 4 0.06
17 2 0.03
19 15 0.24
20 20 0.32
21 12 0.19
ACGTcount: A:0.46, C:0.19, G:0.24, T:0.11
Consensus pattern (20 bp):
AATGAAAATCGCAACGAGAG
Found at i:81989 original size:21 final size:21
Alignment explanation
Indices: 81935--81999 Score: 96
Period size: 21 Copynumber: 3.1 Consensus size: 21
81925 TCTTTTGGTT
81935 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
***
81956 G-AATGACTCTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
81976 GAAATGAAAATCGCAACGAGA
1 GAAATGAAAATCGCAACGAGA
81997 GAA
1 GAA
82000 TCGCAACGCG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
20 17 0.46
21 20 0.54
ACGTcount: A:0.48, C:0.17, G:0.25, T:0.11
Consensus pattern (21 bp):
GAAATGAAAATCGCAACGAGA
Found at i:82003 original size:14 final size:14
Alignment explanation
Indices: 81984--82040 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
81974 GAGAAATGAA
81984 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
81998 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
82017 AATCGCAACGAGAG
1 AATCGCAACGAGAG
82031 AATCGCAACG
1 AATCGCAACG
82041 CGAAATGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:82016 original size:33 final size:33
Alignment explanation
Indices: 81935--82057 Score: 165
Period size: 33 Copynumber: 3.5 Consensus size: 33
81925 TCTTTTGGTT
*
81935 GAAATGAAAATCGCAACGAGAGAATGACTCTCGCAACGAGA
1 GAAATGAAAATCGCAACGAGAG-A--A---TCGCAAC--GC
81976 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
82009 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
82042 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
82058 TGCGATTTTG
Statistics
Matches: 81, Mismatches: 1, Indels: 8
0.90 0.01 0.09
Matches are distributed among these distances:
33 50 0.62
35 7 0.09
38 1 0.01
40 1 0.01
41 22 0.27
ACGTcount: A:0.46, C:0.20, G:0.24, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:82093 original size:14 final size:14
Alignment explanation
Indices: 82074--82130 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
82064 TTTGGTTTCG
82074 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
82088 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
82107 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
82121 CGTTGCGATT
1 CGTTGCGATT
82131 TTCATTTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:82106 original size:33 final size:33
Alignment explanation
Indices: 82058--82137 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
82048 AAAATCGCAA
**
82058 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
82091 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
82124 TGCGATTTTCATTT
1 TGCGATTTTCATTT
82138 TTCTCGTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.09, C:0.21, G:0.23, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:82143 original size:21 final size:21
Alignment explanation
Indices: 82118--82191 Score: 96
Period size: 21 Copynumber: 3.5 Consensus size: 21
82108 GTTGCGATTC
82118 TCTCGTTGCGATTTTCATTTT
1 TCTCGTTGCGATTTTCATTTT
**
82139 TCTCGTTGCAGATAGTCA-TTT
1 TCTCGTTGC-GATTTTCATTTT
* *
82160 TCACGTTGCGATTTTCATTTA
1 TCTCGTTGCGATTTTCATTTT
82181 TCTCGTTGCGA
1 TCTCGTTGCGA
82192 CTCTTCTGCA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 6 0.14
21 32 0.73
22 6 0.14
ACGTcount: A:0.15, C:0.20, G:0.18, T:0.47
Consensus pattern (21 bp):
TCTCGTTGCGATTTTCATTTT
Found at i:82351 original size:14 final size:14
Alignment explanation
Indices: 82332--82388 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
82322 TTTGGTTTCG
82332 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
82346 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
82365 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
82379 CGTTGCGATT
1 CGTTGCGATT
82389 TTCATTTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:82364 original size:33 final size:33
Alignment explanation
Indices: 82316--82395 Score: 142
Period size: 33 Copynumber: 2.4 Consensus size: 33
82306 AAAATCGCAA
**
82316 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
82349 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
82382 TGCGATTTTCATTT
1 TGCGATTTTCATTT
82396 TTCTCGTTGC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.09, C:0.21, G:0.23, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:82401 original size:21 final size:21
Alignment explanation
Indices: 82376--82449 Score: 105
Period size: 21 Copynumber: 3.5 Consensus size: 21
82366 GTTGCGATTC
82376 TCTCGTTGCGATTTTCATTTT
1 TCTCGTTGCGATTTTCATTTT
**
82397 TCTCGTTGCAGATAGTCA-TTT
1 TCTCGTTGC-GATTTTCATTTT
*
82418 TCACGTTGCGATTTTCATTTT
1 TCTCGTTGCGATTTTCATTTT
82439 TCTCGTTGCGA
1 TCTCGTTGCGA
82450 CTCTTCTGCA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
20 6 0.13
21 33 0.73
22 6 0.13
ACGTcount: A:0.14, C:0.20, G:0.18, T:0.49
Consensus pattern (21 bp):
TCTCGTTGCGATTTTCATTTT
Found at i:82470 original size:258 final size:258
Alignment explanation
Indices: 82013--82573 Score: 1104
Period size: 258 Copynumber: 2.2 Consensus size: 258
82003 CAACGCGAAA
*
82013 TGAAAATCGCAACGAGAGAATCGCAACGCGAAATGAAAATCGCAATGCGATTTTGGTTTCGCGTT
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAATGAAAATCGCAATGCGATTTTGGTTTCGCGTT
82078 GCGATTCTCTCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTTTCTC
66 GCGATTCTCTCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTTTCTC
82143 GTTGCAGATAGTCATTTTCACGTTGCGATTTTCATTTATCTCGTTGCGACTCTTCTGCAAATTGA
131 GTTGCAGATAGTCATTTTCACGTTGCGATTTTCATTTATCTCGTTGCGACTCTTCTGCAAATTGA
82208 AACTTGAATGGATTGCATTACTTCAACCAAAAGACAGAACAAAGACAAAGACAAATACTAACT
196 AACTTGAATGGATTGCATTACTTCAACCAAAAGACAGAACAAAGACAAAGACAAATACTAACT
82271 TGAAAATCGCAACGAGAGAATAGCAACGCGAAATGAAAATCGCAATGCGATTTTGGTTTCGCGTT
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAATGAAAATCGCAATGCGATTTTGGTTTCGCGTT
82336 GCGATTCTCTCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTTTCTC
66 GCGATTCTCTCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTTTCTC
*
82401 GTTGCAGATAGTCATTTTCACGTTGCGATTTTCATTTTTCTCGTTGCGACTCTTCTGCAAATTGA
131 GTTGCAGATAGTCATTTTCACGTTGCGATTTTCATTTATCTCGTTGCGACTCTTCTGCAAATTGA
82466 AACTTGAATGGATTGCATTACTTCAACCAAAAGACAGAACAAAGACAAAGACAAATACTAACT
196 AACTTGAATGGATTGCATTACTTCAACCAAAAGACAGAACAAAGACAAAGACAAATACTAACT
82529 TGAAAATCGCAACGAGAGAATAGCAACGCGAAATGAAAATCGCAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAATGAAAATCGCAA
82574 CGAGAGAATC
Statistics
Matches: 301, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
258 301 1.00
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (258 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAATGAAAATCGCAATGCGATTTTGGTTTCGCGTT
GCGATTCTCTCGTTGCGATTTTCATTTCGCGTTGCGATTCTCTCGTTGCGATTTTCATTTTTCTC
GTTGCAGATAGTCATTTTCACGTTGCGATTTTCATTTATCTCGTTGCGACTCTTCTGCAAATTGA
AACTTGAATGGATTGCATTACTTCAACCAAAAGACAGAACAAAGACAAAGACAAATACTAACT
Found at i:82571 original size:33 final size:33
Alignment explanation
Indices: 82529--82599 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
82519 AATACTAACT
82529 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
* *
82562 TGAAAATCGCAACGAGAGAATCGTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
82595 TGAAA
1 TGAAA
82600 TCTAAGTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.48, C:0.17, G:0.24, T:0.11
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:83003 original size:20 final size:20
Alignment explanation
Indices: 82978--83170 Score: 246
Period size: 20 Copynumber: 9.6 Consensus size: 20
82968 CTTTAAAAAT
82978 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
82998 CGCGTTGCGATTTTACGTAT-
1 CGCGTTGCGA-TTTACGGATA
*
83018 TGTCGTTGCGATTTACGGATA
1 CG-CGTTGCGATTTACGGATA
*
83039 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
*
83059 CGCATTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
83079 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
83099 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
83119 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
83139 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
83159 CGCGTTGCGATT
1 CGCGTTGCGATT
83171 CTGGAAAATC
Statistics
Matches: 152, Mismatches: 16, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
20 134 0.88
21 18 0.12
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:88235 original size:20 final size:20
Alignment explanation
Indices: 88185--88235 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
88175 TAACACCAGA
*
88185 GTATCGATACACATCATAGG
1 GTATCGATACTCATCATAGG
*
88205 GTATCGATACTCATCCTAGG
1 GTATCGATACTCATCATAGG
88225 GTATCGATACT
1 GTATCGATACT
88236 GCCTTAACCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (20 bp):
GTATCGATACTCATCATAGG
Found at i:88291 original size:20 final size:19
Alignment explanation
Indices: 88262--88300 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
88252 CCACATTAGT
88262 CAGGGGGTATCGATACCAA
1 CAGGGGGTATCGATACCAA
88281 CAGGTGGGTATCGATACCAA
1 CAGG-GGGTATCGATACCAA
88301 ATGTTTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.21, G:0.31, T:0.18
Consensus pattern (19 bp):
CAGGGGGTATCGATACCAA
Found at i:96464 original size:90 final size:90
Alignment explanation
Indices: 96305--96992 Score: 1087
Period size: 90 Copynumber: 7.7 Consensus size: 90
96295 AAAGGAAATG
* *
96305 TTGAAAACATCCTGC-CCGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAGAAACCCCC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
96369 GAAGGCTTAGTTTCTAAAATCTCAT
66 GAAGGCTTAGTTTCTAAAATCTCAT
* *
96394 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCTCT
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
*
96459 AAAGGCTTAGTTTCTAAAATCTCAT
66 GAAGGCTTAGTTTCTAAAATCTCAT
* *
96484 TTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAATTCAAGAAACCCCC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
*
96549 GAAGGCTTAGTTTCTTAAATCTCAT
66 GAAGGCTTAGTTTCTAAAATCTCAT
* * * *
96574 TTGAAAACATCCTACACTGAAGGTCTTATGCATGGCCTGAAGGACTTACAAATCAAGAAA-CCTC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
*
96638 GAAGGCTTAGTTTCTATAATCTCAT
66 GAAGGCTTAGTTTCTAAAATCTCAT
* *
96663 TTGAAAACATCTTGTACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
*
96728 GAAGGCTTAGTTTCTATAATCTCAT
66 GAAGGCTTAGTTTCTAAAATCTCAT
***
96753 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGATTGAAGGACTTACAAATCAAGAAACCCCC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
* * *
96818 GAAGTCTTAGTTTTTTAAATCTCAT
66 GAAGGCTTAGTTTCTAAAATCTCAT
* *
96843 TTGAAAACATCCTGC-CCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
* *
96907 AAAGGCTTAGTTTCTTAAATCTCAT
66 GAAGGCTTAGTTTCTAAAATCTCAT
* *
96932 TTGAAAACATCCTGC-CCGAAGGTCTTATGGATGGCCCGAAGGACTTACATCATCAAGAAAC
1 TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACA-AATCAAGAAAC
96993 TATTGAAAAT
Statistics
Matches: 552, Mismatches: 44, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
89 211 0.38
90 341 0.62
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (90 bp):
TTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
GAAGGCTTAGTTTCTAAAATCTCAT
Found at i:96736 original size:179 final size:178
Alignment explanation
Indices: 96305--96992 Score: 1076
Period size: 179 Copynumber: 3.8 Consensus size: 178
96295 AAAGGAAATG
* *
96305 TTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCG
1 TTGAAAACATCCTGACCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
*
96370 AAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA
66 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA
* *
96435 GGACTTACAAATCAAGAAACCTCTAAAGGCTTAGTTTCTAAAATCTCAT
131 GGACTTACAAATCAAGAAACCTC-GAAGGCTTAGTTTCTATAATCTCAT
* * *
96484 TTGAAAACATCATGCACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAATTCAAGAAACCCCC
1 TTGAAAACATCCTG-ACCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
* * *
96549 GAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTACACTGAAGGTCTTATGCATGGCCTGA
65 GAAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGA
96614 AGGACTTACAAATCAAGAAACCTCGAAGGCTTAGTTTCTATAATCTCAT
130 AGGACTTACAAATCAAGAAACCTCGAAGGCTTAGTTTCTATAATCTCAT
* *
96663 TTGAAAACATCTTGTACTGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
1 TTGAAAACATCCTG-ACCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
***
96728 GAAGGCTTAGTTTC-TATAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGATTG
65 GAAGGCTTAGTTTCTTA-AATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCG
* * *
96792 AAGGACTTACAAATCAAGAAACCCCCGAAGTCTTAGTTT-TTTAAATCTCAT
129 AAGGACTTACAAATCAAGAAA-CCTCGAAGGCTTAGTTTCTAT-AATCTCAT
* * *
96843 TTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCA
1 TTGAAAACATCCTGACCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
*
96908 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGC-CCGAAGGTCTTATGGATGGCCCGAA
66 AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA
*
96972 GGACTTACATCATCAAGAAAC
131 GGACTTACA-AATCAAGAAAC
96993 TATTGAAAAT
Statistics
Matches: 472, Mismatches: 31, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
178 33 0.07
179 270 0.57
180 169 0.36
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (178 bp):
TTGAAAACATCCTGACCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
AAGGCTTAGTTTCTTAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA
GGACTTACAAATCAAGAAACCTCGAAGGCTTAGTTTCTATAATCTCAT
Found at i:96784 original size:269 final size:268
Alignment explanation
Indices: 96305--96992 Score: 1101
Period size: 269 Copynumber: 2.6 Consensus size: 268
96295 AAAGGAAATG
*
96305 TTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCAAAGGACTTACAAATCAAGAAACCCCCG
1 TTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
*
96370 AAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCCTGCACTGAAGGTCTTATGGATGGCCCGAA
66 AAGGCTTAGTTTCTATAATCTCATTTGAAAACATCCTG-ACTGAAGGTCTTATGGATGGCCCGAA
* *
96435 GGACTTACAAATCAAGAAACCTCTAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
130 GGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCA
* *
96500 CTGAAGGTCTTATGGATGGCCCGAAGGACTTACAATTCAAGAAACCCCCGAAGGCTTAGTTTCTT
195 CTGAAGGTCTTATGGATGGACCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTT
96565 AAATCTCAT
260 AAATCTCAT
* * * * *
96574 TTGAAAACATCCTACACTGAAGGTCTTATGCATGGCCTGAAGGACTTACAAATCAAGAAA-CCTC
1 TTGAAAACATCCTGC-CCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCC
*
96638 GAAGGCTTAGTTTCTATAATCTCATTTGAAAACATCTTGTACTGAAGGTCTTATGGATGGCCCGA
65 GAAGGCTTAGTTTCTATAATCTCATTTGAAAACATCCTG-ACTGAAGGTCTTATGGATGGCCCGA
* * *
96703 AGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTATAATCTCATTTGAAAACATCCTGC
129 AGGACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGC
** * *
96768 ACTGAAGGTCTTATGGATGGATTGAAGGACTTACAAATCAAGAAACCCCCGAAGTCTTAGTTTTT
194 ACTGAAGGTCTTATGGATGGACCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCT
96833 TAAATCTCAT
259 TAAATCTCAT
* *
96843 TTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAATCCCCA
1 TTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
* *
96908 AAGGCTTAGTTTCT-TAAATCTCATTTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAA
66 AAGGCTTAGTTTCTAT-AATCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGATGGCCCGAA
*
96972 GGACTTACATCATCAAGAAAC
130 GGACTTACA-AATCAAGAAAC
96993 TATTGAAAAT
Statistics
Matches: 385, Mismatches: 30, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
268 75 0.19
269 270 0.70
270 40 0.10
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.26
Consensus pattern (268 bp):
TTGAAAACATCCTGCCCGAAGGTCTTATGGATGGCCCGAAGGACTTACAAATCAAGAAACCCCCG
AAGGCTTAGTTTCTATAATCTCATTTGAAAACATCCTGACTGAAGGTCTTATGGATGGCCCGAAG
GACTTACAAATCAAGAAACCCCCAAAGGCTTAGTTTCTAAAATCTCATTTGAAAACATCATGCAC
TGAAGGTCTTATGGATGGACCGAAGGACTTACAAATCAAGAAACCCCCGAAGGCTTAGTTTCTTA
AATCTCAT
Found at i:97126 original size:43 final size:43
Alignment explanation
Indices: 97020--97364 Score: 455
Period size: 43 Copynumber: 8.0 Consensus size: 43
97010 AGTTTCTTAT
* **
97020 TTGTCACCAAGGAACCCCTACATATCATGTTGGTCCCTCAAG-
1 TTGTCATCAAGGAACCCCTACATATCACATTGGTCCCTCAAGC
*
97062 -TGTTCATCAAGGAAGCCCTACATATCACATTGGTCCCTCAAGC
1 TTG-TCATCAAGGAACCCCTACATATCACATTGGTCCCTCAAGC
* *
97105 TTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTTAAGC
1 TTGTCATCAAGGAACCCCTACATATCACATTGGTCCCTCAAGC
*
97148 TTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGC
1 TTGTCATCAAGGAACCCCTACATATCACATTGGTCCCTCAAGC
* **
97191 TTGTCATCAAGGAACCCCTACATATTACGA-TGGTTTCTCAAGC
1 TTGTCATCAAGGAACCCCTACATATCAC-ATTGGTCCCTCAAGC
* * *
97234 TTGTCATCAAGGAACCCCTATATATCACGTTGGTTCCTCAAGC
1 TTGTCATCAAGGAACCCCTACATATCACATTGGTCCCTCAAGC
* * * *
97277 TTGTCATCAAGGAACCCGTACACATCACAATGGTCCCTTAAGC
1 TTGTCATCAAGGAACCCCTACATATCACATTGGTCCCTCAAGC
* * *
97320 TTTTCATCAAGGAACCCCTACATGTCACGA-TGGTTCCTCAAGC
1 TTGTCATCAAGGAACCCCTACATATCAC-ATTGGTCCCTCAAGC
97363 TT
1 TT
97365 AGTTTCTTAT
Statistics
Matches: 268, Mismatches: 29, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
41 2 0.01
42 35 0.13
43 228 0.85
44 3 0.01
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.28
Consensus pattern (43 bp):
TTGTCATCAAGGAACCCCTACATATCACATTGGTCCCTCAAGC
Found at i:97249 original size:129 final size:129
Alignment explanation
Indices: 97020--97364 Score: 507
Period size: 129 Copynumber: 2.7 Consensus size: 129
97010 AGTTTCTTAT
* * *
97020 TTGTCACCAAGGAACCCCTACATATCATGTTGGTCCCTCAAG--TGTTCATCAAGGAAGCCCTAC
1 TTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGCTTG-TCATCAAGGAACCCCTAC
* *
97083 ATATCAC-ATTGGTCCCTCAAGCTTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTTAAG
65 ATATCACGA-TGGTTCCTCAAGCTTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAG
97147 C
129 C
97148 TTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGCTTGTCATCAAGGAACCCCTACA
1 TTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGCTTGTCATCAAGGAACCCCTACA
* * * *
97213 TATTACGATGGTTTCTCAAGCTTGTCATCAAGGAACCCCTATATATCACGTTGGTTCCTCAAGC
66 TATCACGATGGTTCCTCAAGCTTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGC
* * ** * *
97277 TTGTCATCAAGGAACCCGTACACATCACAATGGTCCCTTAAGCTTTTCATCAAGGAACCCCTACA
1 TTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGCTTGTCATCAAGGAACCCCTACA
*
97342 TGTCACGATGGTTCCTCAAGCTT
66 TATCACGATGGTTCCTCAAGCTT
97365 AGTTTCTTAT
Statistics
Matches: 196, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
128 40 0.20
129 153 0.78
130 3 0.02
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.28
Consensus pattern (129 bp):
TTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGCTTGTCATCAAGGAACCCCTACA
TATCACGATGGTTCCTCAAGCTTGTCATCAAGGAACCCCTACATATCACGTTGGTCCCTCAAGC
Found at i:99898 original size:11 final size:12
Alignment explanation
Indices: 99882--99911 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
99872 AATCCCTCTT
99882 TTTTTCT-TTTC
1 TTTTTCTGTTTC
99893 TTTTTCTGTTTC
1 TTTTTCTGTTTC
99905 TTTTTCT
1 TTTTTCT
99912 CTCCTTCTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.00, C:0.17, G:0.03, T:0.80
Consensus pattern (12 bp):
TTTTTCTGTTTC
Found at i:107837 original size:19 final size:20
Alignment explanation
Indices: 107797--107837 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
107787 ATAACATTAC
*
107797 TATACTACATGCATTCAATA
1 TATACTACATGCATACAATA
107817 TATAC-ACATGC-TACAAGTA
1 TATACTACATGCATACAA-TA
107836 TA
1 TA
107838 ATGATGAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
18 4 0.21
19 10 0.53
20 5 0.26
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (20 bp):
TATACTACATGCATACAATA
Found at i:110826 original size:21 final size:20
Alignment explanation
Indices: 110794--110835 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
110784 TTGGGCTACT
*
110794 TCTTTAGAAAGTTTCGAAAC
1 TCTTTAGAAAGTTTCAAAAC
*
110814 TCTTGTAGGAAGTTTCAAAAC
1 TCTT-TAGAAAGTTTCAAAAC
110835 T
1 T
110836 TATGGTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (20 bp):
TCTTTAGAAAGTTTCAAAAC
Found at i:117071 original size:2 final size:2
Alignment explanation
Indices: 117064--117122 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
117054 TCAATCTACA
117064 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
117106 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
117123 CGACATACAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:121827 original size:20 final size:21
Alignment explanation
Indices: 121780--121830 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
121770 TACTCAGTCA
121780 AGTATCGATACCCAACACTAG
1 AGTATCGATACCCAACACTAG
* * *
121801 AGCATCGATACTCATC-CTAG
1 AGTATCGATACCCAACACTAG
*
121821 GGTATCGATA
1 AGTATCGATA
121831 TTGCCTTAGC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 12 0.48
21 13 0.52
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (21 bp):
AGTATCGATACCCAACACTAG
Found at i:124740 original size:2 final size:2
Alignment explanation
Indices: 124733--124767 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
124723 TCAATCTACA
124733 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
124768 ATTTACGACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:124947 original size:13 final size:13
Alignment explanation
Indices: 124923--124974 Score: 68
Period size: 13 Copynumber: 4.0 Consensus size: 13
124913 AATGACATGC
*
124923 AATGCTCGTCATA
1 AATGCGCGTCATA
*
124936 ACTGCGCGTCATA
1 AATGCGCGTCATA
* *
124949 AATGAGTGTCATA
1 AATGCGCGTCATA
124962 AATGCGCGTCATA
1 AATGCGCGTCATA
124975 GATTTATGAC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (13 bp):
AATGCGCGTCATA
Found at i:125805 original size:21 final size:21
Alignment explanation
Indices: 125781--125824 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
125771 AGCTGGAGAA
125781 AATAGTGGAGAAGATGAGACC
1 AATAGTGGAGAAGATGAGACC
125802 AATAGTGGAGAAGATGAGACC
1 AATAGTGGAGAAGATGAGACC
125823 AA
1 AA
125825 CTGGAGAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.45, C:0.09, G:0.32, T:0.14
Consensus pattern (21 bp):
AATAGTGGAGAAGATGAGACC
Found at i:125831 original size:19 final size:21
Alignment explanation
Indices: 125781--125833 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
125771 AGCTGGAGAA
*
125781 AATAGTGGAGAAGATGAGACC
1 AATACTGGAGAAGATGAGACC
*
125802 AATAGTGGAGAAGATGAGACC
1 AATACTGGAGAAGATGAGACC
125823 -A-ACTGGAGAAG
1 AATACTGGAGAAG
125834 TTTTCTTAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 9 0.29
20 1 0.03
21 21 0.68
ACGTcount: A:0.43, C:0.09, G:0.34, T:0.13
Consensus pattern (21 bp):
AATACTGGAGAAGATGAGACC
Found at i:128241 original size:12 final size:12
Alignment explanation
Indices: 128224--128264 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
128214 GATCCATCAT
*
128224 TTTTTTATTTTA
1 TTTTTTAGTTTA
*
128236 TTTTTTAGTTTG
1 TTTTTTAGTTTA
*
128248 TTATTTAGTTTA
1 TTTTTTAGTTTA
128260 TTTTT
1 TTTTT
128265 ATAAAAAGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.15, C:0.00, G:0.07, T:0.78
Consensus pattern (12 bp):
TTTTTTAGTTTA
Found at i:132247 original size:84 final size:84
Alignment explanation
Indices: 132034--132249 Score: 235
Period size: 84 Copynumber: 2.6 Consensus size: 84
132024 AAACTCATTT
** * * * *
132034 TTTAGGATATTAT-TTTAATTTTATCTTTAGGAATTTTAGTTTAAATAGTTTTAAGTGTTTTTAT
1 TTTAGGATATTATATTTAGCTTTATCTTTAGGAATTTAAGTATAAATACTTTTAAGTGTTTTAAT
*
132098 TAGGATTTAGGATATTATC
66 TAGGATTTAAGATATTATC
** * * * *
132117 TTTATTATATTTTATTTATCTTTATCTTTAGGAATTTTAGTTTAAATACTTTTAAGTGTTTTAAT
1 TTTAGGATATTATATTTAGCTTTATCTTTAGGAATTTAAGTATAAATACTTTTAAGTGTTTTAAT
132182 TAGGATTTAAGATATTAT-
66 TAGGATTTAAGATATTATC
*
132200 TTTAGGA-ATTATCTTTAGCTTGT-T-TTTAGGAATTTGAAGGCTATAAATAC
1 TTTAGGATATTATATTTAGCTT-TATCTTTAGGAATTT-AA-G-TATAAATAC
132250 CCTCTCAAGG
Statistics
Matches: 113, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
81 11 0.10
82 13 0.12
83 17 0.15
84 72 0.64
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.53
Consensus pattern (84 bp):
TTTAGGATATTATATTTAGCTTTATCTTTAGGAATTTAAGTATAAATACTTTTAAGTGTTTTAAT
TAGGATTTAAGATATTATC
Found at i:133086 original size:75 final size:75
Alignment explanation
Indices: 132954--133136 Score: 233
Period size: 75 Copynumber: 2.4 Consensus size: 75
132944 TTTTTCTATA
* * *
132954 CTTAATATTATGGTTTCAGTCTTAAGATTTGACACTTTAATATTATGGTTTAATTATGGATTTTA
1 CTTAATATTATGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTAATTATGGATTTTA
*
133019 TTATTTTAGAG
66 TTATTCTA-AG
* * * * **
133030 -TTAACATTATGGTTTGAATCTTGAGATTTGACATTTTAATATTGTGATTTGCTTATGGATTTTA
1 CTTAATATTATGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTAATTATGGATTTTA
*
133094 TTGTTCTAAG
66 TTATTCTAAG
* *
133104 CTTAATATTGTGGTTTGAGTCTTGATATTTGAC
1 CTTAATATTATGGTTTGAGTCTTGAGATTTGAC
133137 TTTATTTATA
Statistics
Matches: 91, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
74 2 0.02
75 89 0.98
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (75 bp):
CTTAATATTATGGTTTGAGTCTTGAGATTTGACACTTTAATATTATGATTTAATTATGGATTTTA
TTATTCTAAG
Found at i:133180 original size:18 final size:19
Alignment explanation
Indices: 133138--133181 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
133128 ATATTTGACT
* *
133138 TTATTTATAATTTTTTACA
1 TTATTTATAATTTTTAAAA
133157 TCTATTTATAA-TTTTAAAA
1 T-TATTTATAATTTTTAAAA
133176 TTATTT
1 TTATTT
133182 TATATGATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 8 0.36
20 9 0.41
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TTATTTATAATTTTTAAAA
Found at i:133277 original size:12 final size:12
Alignment explanation
Indices: 133245--133282 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
133235 TTCTGTCCCA
**
133245 GTCCCCGTCCCC
1 GTCCCCGTATCC
133257 GTCCCCGTATCC
1 GTCCCCGTATCC
133269 GTCCCCGTATCC
1 GTCCCCGTATCC
133281 GT
1 GT
133283 ATCTGTATCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.05, C:0.53, G:0.18, T:0.24
Consensus pattern (12 bp):
GTCCCCGTATCC
Found at i:133282 original size:18 final size:18
Alignment explanation
Indices: 133249--133285 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
133239 GTCCCAGTCC
*
133249 CCGTCCCCGTCCCCGTAT
1 CCGTCCCCGTACCCGTAT
*
133267 CCGTCCCCGTATCCGTAT
1 CCGTCCCCGTACCCGTAT
133285 C
1 C
133286 TGTATCAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.08, C:0.51, G:0.16, T:0.24
Consensus pattern (18 bp):
CCGTCCCCGTACCCGTAT
Found at i:134448 original size:32 final size:31
Alignment explanation
Indices: 134407--134492 Score: 109
Period size: 32 Copynumber: 2.7 Consensus size: 31
134397 TAAAAGTTTA
* *
134407 GGTACTAAAATGAAATAAAAATTTAACAGAGG
1 GGTACTAAAATGAAACAAAAATTTAAC-GACG
*
134439 GGTACTAAAATGAAACAAAAAGTTAACGACG
1 GGTACTAAAATGAAACAAAAATTTAACGACG
* * *
134470 AGTATTAAAATGACACAAAAATT
1 GGTACTAAAATGAAACAAAAATT
134493 AAACTTTAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
31 22 0.47
32 25 0.53
ACGTcount: A:0.53, C:0.09, G:0.16, T:0.21
Consensus pattern (31 bp):
GGTACTAAAATGAAACAAAAATTTAACGACG
Found at i:135323 original size:2 final size:2
Alignment explanation
Indices: 135318--135343 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
135308 AAATTTTTCA
135318 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
135344 GTAATAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:137510 original size:23 final size:23
Alignment explanation
Indices: 137427--137531 Score: 126
Period size: 23 Copynumber: 4.7 Consensus size: 23
137417 ATAAATTGCA
137427 CCGAAGTG-CCACATA--TTTGTC
1 CCGAAG-GACCACATAGTTTTGTC
**
137448 CCGAAGGACCACATAGGATTGTC
1 CCGAAGGACCACATAGTTTTGTC
137471 CCGAAGGACCACATAGTTTTGTC
1 CCGAAGGACCACATAGTTTTGTC
* *
137494 CCGAAGGACCGCATAGTTTTTTC
1 CCGAAGGACCACATAGTTTTGTC
**
137517 CTAAAGGACCACATA
1 CCGAAGGACCACATA
137532 AAACCCTCGA
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
20 1 0.01
21 13 0.18
23 59 0.81
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.24
Consensus pattern (23 bp):
CCGAAGGACCACATAGTTTTGTC
Found at i:144281 original size:23 final size:23
Alignment explanation
Indices: 144228--144318 Score: 85
Period size: 23 Copynumber: 4.0 Consensus size: 23
144218 GTGCGACATA
* * * *
144228 TTTGTCTCGAATGATCACACAGG
1 TTTGTCCCGAATGACCACATAGT
* *
144251 ATTATCCC-AATAGACCACATAGT
1 TTTGTCCCGAAT-GACCACATAGT
144274 TTTGTCCCGAATGACCACATAGT
1 TTTGTCCCGAATGACCACATAGT
* * *
144297 TTTGTCCGGAAGGACCATATAG
1 TTTGTCCCGAATGACCACATAG
144319 AACCCTCGAC
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
22 3 0.05
23 49 0.89
24 3 0.05
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (23 bp):
TTTGTCCCGAATGACCACATAGT
Found at i:154822 original size:298 final size:297
Alignment explanation
Indices: 154238--154828 Score: 977
Period size: 298 Copynumber: 2.0 Consensus size: 297
154228 TTGGCTCCCC
*
154238 ATAGATCACTGTGTATTAACGAGAAAGGTTGAGACTGGACATAAGGTTTTAATGGGTATGGTACA
1 ATAGATCACTGTGTATTAACGAGAAAGGTTGAGACTGGACATAAGGCTTTAATGGGTATGGTACA
* * *
154303 CGGGTGTGTGTGGATAATTGGCAAATTTCACATTTCAAGGAGCTCACACTTTTATTGCGAAATAA
66 CAGGTGTATGTGGATAATTGACAAATTTCACATTTCAAGGAGCTCACACTTTTATTGCGAAATAA
*
154368 CAATGGAAGATGTTTCTTCAAATACAAGAAGTTTGGATGTCCTAGTCTACGATGTCATAACATAA
131 CAATGGAAGATGTTTCTTCAAATACAAGAAGTTTGGATGTCCTAGTCTACGACGTCATAACATAA
* * *
154433 TTGTGTCATCTTTTGAAGTAGATAGAGACCATCTTTCTTGTGTACTGTCTTTATTCTAAACATAG
196 TTGTGTCATCTTTTGAAGTAGATAGAGACAATCCTTCTTGTGTACTGTCTTTATTCTAAACATAA
*
154498 AGTTCATCATAAACTTTAGCAGTGCCAATCATCCTCT
261 AGTCCATCATAAACTTTAGCAGTGCCAATCATCCTCT
* * *
154535 ATAGATCTCTGTGTATTAACGATGAAAGTTTGAGACTGGATATAAGGCTTTAATGGGTATGGTAC
1 ATAGATCACTGTGTATTAACGA-GAAAGGTTGAGACTGGACATAAGGCTTTAATGGGTATGGTAC
*
154600 ACAGGT-TCATTTGGATAATTGACAAATTTCACATTTCAAGGAGCTCACACTTTTATTGCGAAAT
65 ACAGGTGT-ATGTGGATAATTGACAAATTTCACATTTCAAGGAGCTCACACTTTTATTGCGAAAT
* *
154664 AACAATGGAAGATGTTTTTTCAAATACAAGAAGTTTGGATGTCCTAGTCTACGGCGTCATAACAT
129 AACAATGGAAGATGTTTCTTCAAATACAAGAAGTTTGGATGTCCTAGTCTACGACGTCATAACAT
* *
154729 AATTGTGTCCTCTTTTGAAGTAGATAGAGTCAATCCTTCTTGTGTACTGTCTTTATTCTAAACAT
194 AATTGTGTCATCTTTTGAAGTAGATAGAGACAATCCTTCTTGTGTACTGTCTTTATTCTAAACAT
* * *
154794 AAAGTCCATCATCAACTTTGGTAGTGCCAATCATC
259 AAAGTCCATCATAAACTTTAGCAGTGCCAATCATC
154829 ATCCTCGATT
Statistics
Matches: 272, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
297 22 0.08
298 250 0.92
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (297 bp):
ATAGATCACTGTGTATTAACGAGAAAGGTTGAGACTGGACATAAGGCTTTAATGGGTATGGTACA
CAGGTGTATGTGGATAATTGACAAATTTCACATTTCAAGGAGCTCACACTTTTATTGCGAAATAA
CAATGGAAGATGTTTCTTCAAATACAAGAAGTTTGGATGTCCTAGTCTACGACGTCATAACATAA
TTGTGTCATCTTTTGAAGTAGATAGAGACAATCCTTCTTGTGTACTGTCTTTATTCTAAACATAA
AGTCCATCATAAACTTTAGCAGTGCCAATCATCCTCT
Found at i:183438 original size:14 final size:15
Alignment explanation
Indices: 183415--183448 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
183405 ATTTTCATGA
*
183415 CATCATTCCTTACCT
1 CATCATTCCTTACAT
183430 CATCA-TCCTTACAT
1 CATCATTCCTTACAT
183444 CATCA
1 CATCA
183449 AAGTCAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.26, C:0.38, G:0.00, T:0.35
Consensus pattern (15 bp):
CATCATTCCTTACAT
Found at i:184165 original size:12 final size:12
Alignment explanation
Indices: 184148--184172 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
184138 AAATATAATA
184148 TATATATATATT
1 TATATATATATT
184160 TATATATATATT
1 TATATATATATT
184172 T
1 T
184173 GACAATTGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TATATATATATT
Found at i:185328 original size:42 final size:42
Alignment explanation
Indices: 185282--185380 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
185272 CGGTGTTTGA
* *
185282 GTGCATGGATGCACTGCA-TGATTCATCGATGCACTAGT-GCAG
1 GTGCATGGATGCACTGCAGGGATGCATCGATGCACT-GTAG-AG
* *
185324 GTGCATGGATGCACTGCAGGGATGCATGGATGCACTGTAGGG
1 GTGCATGGATGCACTGCAGGGATGCATCGATGCACTGTAGAG
185366 GTGCATGGATGCACT
1 GTGCATGGATGCACT
185381 TTGACACCCT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
42 36 0.71
43 15 0.29
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.24
Consensus pattern (42 bp):
GTGCATGGATGCACTGCAGGGATGCATCGATGCACTGTAGAG
Found at i:185351 original size:21 final size:20
Alignment explanation
Indices: 185283--185380 Score: 99
Period size: 21 Copynumber: 4.7 Consensus size: 20
185273 GGTGTTTGAG
*
185283 TGCATGGATGCACTGCATGA
1 TGCATGGATGCACTGCAGGA
* *
185303 TTCATCGATGCACTAGTGCAGG-
1 TGCATGGATGCAC---TGCAGGA
185325 TGCATGGATGCACTGCAGGGA
1 TGCATGGATGCACTGCA-GGA
* *
185346 TGCATGGATGCACTGTAGGGG
1 TGCATGGATGCACTGCA-GGA
185367 TGCATGGATGCACT
1 TGCATGGATGCACT
185381 TTGACACCCT
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
19 4 0.06
20 13 0.20
21 33 0.50
22 11 0.17
23 5 0.08
ACGTcount: A:0.22, C:0.19, G:0.34, T:0.24
Consensus pattern (20 bp):
TGCATGGATGCACTGCAGGA
Found at i:185510 original size:29 final size:30
Alignment explanation
Indices: 185460--185519 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
185450 ATACTTTGAA
185460 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
185489 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
185520 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:188383 original size:34 final size:32
Alignment explanation
Indices: 188321--188390 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
188311 ATCTTACAAC
* *
188321 TCCCTAGTTTTTCCGGGCTAAACTAGAACCTT
1 TCCCTAGTTTTACCGGGATAAACTAGAACCTT
*
188353 TCCCTAGCTTTTACACGGGATAAGCTAGAACCTT
1 TCCCTAG-TTTTAC-CGGGATAAACTAGAACCTT
188387 TCCC
1 TCCC
188391 CTTTACAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 7 0.21
33 5 0.15
34 21 0.64
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (32 bp):
TCCCTAGTTTTACCGGGATAAACTAGAACCTT
Found at i:188879 original size:21 final size:20
Alignment explanation
Indices: 188811--188908 Score: 81
Period size: 21 Copynumber: 4.7 Consensus size: 20
188801 GGTGTTTGAG
*
188811 TGCATGGATGCACTGCATGA
1 TGCATGGATGCACTGCAGGA
** *
188831 TAAATCGATGCACTAGTGCAGG-
1 TGCATGGATGCAC---TGCAGGA
188853 TGCATGGATGCACTGCAGGGA
1 TGCATGGATGCACTGCA-GGA
* * *
188874 TGCATGAATGCACTGTAGGGG
1 TGCATGGATGCACTGCA-GGA
188895 TGCATGGATGCACT
1 TGCATGGATGCACT
188909 TTGACACCCT
Statistics
Matches: 62, Mismatches: 11, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
19 4 0.06
20 12 0.19
21 31 0.50
22 10 0.16
23 5 0.08
ACGTcount: A:0.26, C:0.18, G:0.33, T:0.23
Consensus pattern (20 bp):
TGCATGGATGCACTGCAGGA
Found at i:189009 original size:29 final size:29
Alignment explanation
Indices: 188988--189045 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
188978 AAACTTTGAA
188988 TAAATTCAATT-AAGTCCAAAAACATTTTG
1 TAAATTCAATTCAAGTCCAAAAACA-TTTG
189017 TAAATTCAATTCAAGTCCAAAAACCATTT
1 TAAATTCAATTCAAGTCCAAAAA-CATTT
189046 TGCCTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 11 0.41
30 14 0.52
31 2 0.07
ACGTcount: A:0.45, C:0.17, G:0.05, T:0.33
Consensus pattern (29 bp):
TAAATTCAATTCAAGTCCAAAAACATTTG
Found at i:189035 original size:30 final size:30
Alignment explanation
Indices: 188988--189047 Score: 104
Period size: 29 Copynumber: 2.0 Consensus size: 30
188978 AAACTTTGAA
188988 TAAATTCAATTAAGTCCAAAAA-CATTTTG
1 TAAATTCAATTAAGTCCAAAAACCATTTTG
189017 TAAATTCAATTCAAGTCCAAAAACCATTTTG
1 TAAATTCAATT-AAGTCCAAAAACCATTTTG
189048 CCTTAAATTG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 11 0.38
30 11 0.38
31 7 0.24
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (30 bp):
TAAATTCAATTAAGTCCAAAAACCATTTTG
Found at i:189459 original size:13 final size:13
Alignment explanation
Indices: 189441--189467 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
189431 GCCAAAGGAA
189441 AATAGATTCCTAC
1 AATAGATTCCTAC
189454 AATAGATTCCTAC
1 AATAGATTCCTAC
189467 A
1 A
189468 CAAAAAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (13 bp):
AATAGATTCCTAC
Found at i:190898 original size:19 final size:19
Alignment explanation
Indices: 190845--190907 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 19
190835 TTCTTATTTT
*
190845 TTTTTCA-TTACATTTGTA
1 TTTTTCATTTACATTTGCA
* *
190863 TTTTTTATGTTTGCATTTGCA
1 TTTTTCA--TTTACATTTGCA
*
190884 TTTTTCATTTACATTTCCA
1 TTTTTCATTTACATTTGCA
190903 TTTTT
1 TTTTT
190908 TCCTATTTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
18 6 0.17
19 15 0.42
21 15 0.42
ACGTcount: A:0.17, C:0.13, G:0.06, T:0.63
Consensus pattern (19 bp):
TTTTTCATTTACATTTGCA
Found at i:196064 original size:52 final size:52
Alignment explanation
Indices: 195986--196197 Score: 201
Period size: 54 Copynumber: 4.0 Consensus size: 52
195976 TTGACCAGAA
*
195986 ATCTGTGCATAAGCCACAGCTGGATGAATGTATTGTCAAATGTTTTACAAAC
1 ATCTGTGCAGAAGCCACAGCTGGATGAATGTATTGTCAAATGTTTTACAAAC
* *
196038 ATCTGTGTAGAAGCCACAGTTGGATGAATGTATTGTCAAATGTTTTACAAAC
1 ATCTGTGCAGAAGCCACAGCTGGATGAATGTATTGTCAAATGTTTTACAAAC
* * * * **** * **
196090 ATCTGTTCATAAACCATAGGAAAAAATGAATGTGTTGTCAAATGTTTTATGAAC
1 ATCTGTGCAGAAGCCACA-G-CTGGATGAATGTATTGTCAAATGTTTTACAAAC
* ** * *
196144 ATCTAG-GCAGAAGCCACGGGAAAGGATGAATGTGTTGTCAAATGTTCTACAAAC
1 ATCT-GTGCAGAAGCCAC-AG-CTGGATGAATGTATTGTCAAATGTTTTACAAAC
196198 CAGTGATTAT
Statistics
Matches: 131, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
52 62 0.47
53 1 0.01
54 67 0.51
55 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (52 bp):
ATCTGTGCAGAAGCCACAGCTGGATGAATGTATTGTCAAATGTTTTACAAAC
Found at i:196589 original size:22 final size:22
Alignment explanation
Indices: 196561--196639 Score: 131
Period size: 22 Copynumber: 3.6 Consensus size: 22
196551 ACATCTACAT
196561 TCTTCAAAGATGATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
196583 TCTTCAAAGATGATATATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
196605 TCTTCAAAGATTATAGATTCTC
1 TCTTCAAAGATGATAGATTCTC
*
196627 TTTTCAAAGATGA
1 TCTTCAAAGATGA
196640 AAGCTTTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.39
Consensus pattern (22 bp):
TCTTCAAAGATGATAGATTCTC
Found at i:197444 original size:45 final size:45
Alignment explanation
Indices: 197308--197522 Score: 243
Period size: 45 Copynumber: 4.8 Consensus size: 45
197298 CTATTTCCCA
* * *
197308 CATCCGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGCGT
* * * * ** *
197353 CATCTATAAGCCATTCAATGCATTAT-TTTTCAAAGTCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGCGT
* *
197397 CATCTGTAAGCCCTTCAGTGTATGATGTTTTCAAAACATTCGCGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGCGT
* * *
197442 CATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCGCGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGCGT
** * * *
197487 CATCCATAAGACCTACAGTGCAGGATGTTTTCAAAA
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
197523 AAGCCTTCGG
Statistics
Matches: 145, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
44 38 0.26
45 107 0.74
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (45 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGCGT
Found at i:197464 original size:89 final size:90
Alignment explanation
Indices: 197308--197522 Score: 272
Period size: 89 Copynumber: 2.4 Consensus size: 90
197298 CTATTTCCCA
* * * *
197308 CATCCGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGTCATCTATAAGCCATTCAATG
1 CATCCGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGCGTCATCTATAAGCCATACAATG
* ** *
197373 CATTAT-TTTTCAAAGTCTTCGGGT
66 CATGATGTTTTCAAAACCTTCGCGT
* * *
197397 CATCTGTAAGCCCTTCAGTGTATGATGTTTTCAAAACATTCGCGTCATCTGTAAGACC-TACAAT
1 CATCCGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGCGTCATCTATAAG-CCATACAAT
197461 GCATGATGTTTTCAAAACCTTCGCGT
65 GCATGATGTTTTCAAAACCTTCGCGT
* * * *
197487 CATCCATAAGACCTACAGTGCAGGATGTTTTCAAAA
1 CATCCGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
197523 AAGCCTTCGG
Statistics
Matches: 107, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
89 60 0.56
90 47 0.44
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (90 bp):
CATCCGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGCGTCATCTATAAGCCATACAATG
CATGATGTTTTCAAAACCTTCGCGT
Found at i:197590 original size:45 final size:45
Alignment explanation
Indices: 197541--197689 Score: 208
Period size: 45 Copynumber: 3.3 Consensus size: 45
197531 GGGAGCTTTT
* *
197541 TGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
197586 TGATGTTTTCAAATCCTTCGGGTCATCTGTAAGCCCTTCAGTGCC
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* ** * *
197631 TGATGTTTTCAAAACCTTCGGGTAATCCATAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
197676 GGATGTTTTCAAAA
1 TGATGTTTTCAAAA
197690 AAGCCTTCGG
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 93 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:197636 original size:122 final size:122
Alignment explanation
Indices: 197419--197644 Score: 317
Period size: 122 Copynumber: 1.9 Consensus size: 122
197409 CTTCAGTGTA
197419 TGATGTTTTCAAAACATTCGCGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
1 TGATGTTTTCAAAACATTCGCGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
197484 CGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAAGCCTTCGGGAGCTTTT
66 CGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAAGCCTTCGGGAGCTTTT
* * * * * * * *
197541 TGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
1 TGATGTTTTCAAAACATTCGCGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
* ** * * **
197606 GGTCATCTGTAAGCCCTTCAGTGCCTGATGTTTTCAAAA
66 CGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAA
197645 CCTTCGGGTA
Statistics
Matches: 89, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
122 89 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (122 bp):
TGATGTTTTCAAAACATTCGCGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
CGTCATCCATAAGACCTACAGTGCAGGATGTTTTCAAAAAAGCCTTCGGGAGCTTTT
Found at i:197661 original size:167 final size:167
Alignment explanation
Indices: 197379--198095 Score: 731
Period size: 167 Copynumber: 4.3 Consensus size: 167
197369 AATGCATTAT
* * * *
197379 TTTTCAAAGTCTTCGGGTCATCTGTAAGCCCTTCAGTGTATGATGTTTTCAAAACATTCGCGTCA
1 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCA
* * * *
197444 TCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCGCGTCATCCATAAGACCTACAGTGCA
66 TCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
*
197509 GGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTTGATG
131 GGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTGGATG
* *
197546 TTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCGGGTCA
1 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCA
* *
197611 TCTGTAAGCCCTTCAGTGCCTGATGTTTTCAAAACCTTCGGGTAATCCATAAGACCTACAGTGCA
66 TCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
197676 GGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTGGATG
131 GGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTGGATG
* * * *
197713 TTTTGAAAGCCTTCGGGTTATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGTAA
1 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCA
* * * * * ** *
197778 TCTATAATCCCTTCAGTGCATGATATTTTTAAATCCTTCGGGTCATCTGTAAGCCCTACAGTGCA
66 TCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
* *
197843 TGATGTTTTC---AAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATG
131 GGATGTTTTCAAAAAAGCCTTCGGG--AGCT-T------TT--G-G-ATG
* * * *
197890 ATGATTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCA
1 -T--TTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTC-AAAA-CCTTCG
* * * *
197955 GG--AGCT-T------TT---TG-AT-A--TTTTCAAAACCTTCGGGTCATCTATAAGCCCAACA
61 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
* *
198004 GTGCAGGATGTTTTC-AAAAAGCCTTCAGGAGCTTTTTGAT-
126 GTGCAGGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTGGATG
* * * * * *
198044 ATTT-AAAGCCTTCGGGTCATCTGTAAGACCTACAATGCAGGATGGTTTCAAA
1 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
198096 TTAGATTTTA
Statistics
Matches: 481, Mismatches: 49, Indels: 58
0.82 0.08 0.10
Matches are distributed among these distances:
149 3 0.01
150 43 0.09
151 3 0.01
155 2 0.00
156 1 0.00
159 2 0.00
164 12 0.02
165 1 0.00
166 51 0.11
167 279 0.58
168 12 0.02
169 2 0.00
170 2 0.00
173 4 0.01
175 1 0.00
176 1 0.00
177 3 0.01
178 1 0.00
179 1 0.00
180 47 0.10
181 3 0.01
182 7 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.33
Consensus pattern (167 bp):
TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCA
TCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
GGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTGGATG
Found at i:197758 original size:45 final size:45
Alignment explanation
Indices: 197709--197945 Score: 357
Period size: 45 Copynumber: 5.3 Consensus size: 45
197699 GGAGCTTTTG
* *
197709 GATGTTTTGAAAGCCTTCGGGTTATCTGTAAGCCCTTCAGTGCAT
1 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCAT
* * *
197754 GATGTTTTCAAAGCCTTCGGGTAATCTATAATCCCTTCAGTGCAT
1 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCAT
* * * *
197799 GATATTTTTAAATCCTTCGGGTCATCTGTAAGCCCTACAGTGCAT
1 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCAT
197844 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCAT
1 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCAT
* * * *
197889 GATGATTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAG
1 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCAT
197934 GATGTTTTCAAA
1 GATGTTTTCAAA
197946 AAGCCTTCAG
Statistics
Matches: 172, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 172 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.34
Consensus pattern (45 bp):
GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCAT
Found at i:197863 original size:257 final size:256
Alignment explanation
Indices: 197541--198021 Score: 755
Period size: 257 Copynumber: 1.9 Consensus size: 256
197531 GGGAGCTTTT
* * * *
197541 TGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAGCCTTCG
* *
197606 GGTCATCTGTAAGCCCTTCAGTGCCTGATGTTTTCAAAACCTTCGGGTAATCCATAAGACCTACA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGATTTCAAAACCTTCGGGTAATCCATAAGACCTACA
* * * * *
197671 GTGCAGGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTGGATGTTTTGAAAGCCTTCGGGTTATCT
131 GTGCAGGATGTTTTC-AAAAAGCCTTCAGGAGCTTTTGGATATTTTCAAAACCTTCGGGTCATCT
* ** *
197736 GTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGTAATCTATAATCCCTTCAGTGCA
195 ATAAGCCCAACAGTGCAGGATGTTTTCAAAGCCTTCGGGTAATCTATAATCCCTTCAGTGCA
* *
197798 TGATATTTTTAAATCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAGCCTTCG
1 TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAGCCTTCG
* * **
197863 GGTCATCTGTAAGCCCTTCAGTGCATGATGATTTCAAAGCCTTCGGGTCATCTGTAAGACCTACA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGATTTCAAAACCTTCGGGTAATCCATAAGACCTACA
*
197928 GTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAAACCTTCGGGTCATCTA
131 GTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTGGATATTTTCAAAACCTTCGGGTCATCTA
197993 TAAGCCCAACAGTGCAGGATGTTTTCAAA
196 TAAGCCCAACAGTGCAGGATGTTTTCAAA
198022 AAGCCTTCAG
Statistics
Matches: 202, Mismatches: 22, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
256 69 0.34
257 133 0.66
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (256 bp):
TGATATTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAGCCTTCG
GGTCATCTGTAAGCCCTTCAGTGCATGATGATTTCAAAACCTTCGGGTAATCCATAAGACCTACA
GTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTGGATATTTTCAAAACCTTCGGGTCATCTA
TAAGCCCAACAGTGCAGGATGTTTTCAAAGCCTTCGGGTAATCTATAATCCCTTCAGTGCA
Found at i:198020 original size:76 final size:75
Alignment explanation
Indices: 197888--198095 Score: 337
Period size: 76 Copynumber: 2.8 Consensus size: 75
197878 CTTCAGTGCA
197888 TGATGATTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
1 TGAT-ATTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
197953 CAGGAGCTTTT
65 CAGGAGCTTTT
* * * *
197964 TGATATTTTCAAAACCTTCGGGTCATCTATAAGCCCAACAGTGCAGGATGTTTTCAAAAAGCCTT
1 TGATA-TTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTT
198029 CAGGAGCTTTT
65 CAGGAGCTTTT
* *
198040 TGATATTT-AAAGCCTTCGGGTCATCTGTAAGACCTACAATGCAGGATGGTTTCAAA
1 TGATATTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAGGATGTTTTCAAA
198096 TTAGATTTTA
Statistics
Matches: 121, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
74 42 0.35
75 4 0.03
76 75 0.62
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (75 bp):
TGATATTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTC
AGGAGCTTTT
Found at i:198356 original size:3 final size:3
Alignment explanation
Indices: 198348--198389 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
198338 TTTTTCCATC
198348 TTA TTA TTA TTA TTA TTA TTA TTA TATA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TT
198390 TAAATAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:209125 original size:3 final size:3
Alignment explanation
Indices: 209117--209174 Score: 89
Period size: 3 Copynumber: 18.7 Consensus size: 3
209107 TTCAGTTTGC
*
209117 TAT TAT TAT TAT TAT TAT TAT ACAT TAT TAT TAT TAT TAT TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TA-T TAT
209164 TAT TAT TAT TA
1 TAT TAT TAT TA
209175 AATAAATATT
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
3 46 0.90
4 5 0.10
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:209145 original size:16 final size:15
Alignment explanation
Indices: 209117--209174 Score: 71
Period size: 16 Copynumber: 3.7 Consensus size: 15
209107 TTCAGTTTGC
*
209117 TATTATTATTATTAT
1 TATTATCATTATTAT
209132 TATTATACATTATTAT
1 TATTAT-CATTATTAT
*
209148 TATTATTATTATTTAT
1 TATTATCATTA-TTAT
*
209164 TATTATTATTA
1 TATTATCATTA
209175 AATAAATATT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
15 10 0.26
16 29 0.74
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTATCATTATTAT
Found at i:209145 original size:19 final size:19
Alignment explanation
Indices: 209117--209174 Score: 84
Period size: 19 Copynumber: 3.1 Consensus size: 19
209107 TTCAGTTTGC
209117 TATT-ATTATTATTATTAT
1 TATTAATTATTATTATTAT
209135 TA-TACATTATTATTATTAT
1 TATTA-ATTATTATTATTAT
*
209154 TATTATTTATTATTATTAT
1 TATTAATTATTATTATTAT
209173 TA
1 TA
209175 AATAAATATT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 1 0.03
18 2 0.06
19 31 0.86
20 2 0.06
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTAATTATTATTATTAT
Found at i:209146 original size:22 final size:22
Alignment explanation
Indices: 209118--209174 Score: 96
Period size: 22 Copynumber: 2.6 Consensus size: 22
209108 TCAGTTTGCT
209118 ATTATTATTATTATTATTATAC
1 ATTATTATTATTATTATTATAC
**
209140 ATTATTATTATTATTATTATTT
1 ATTATTATTATTATTATTATAC
209162 ATTATTATTATTA
1 ATTATTATTATTA
209175 AATAAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
ATTATTATTATTATTATTATAC
Found at i:210921 original size:128 final size:128
Alignment explanation
Indices: 210776--211022 Score: 431
Period size: 128 Copynumber: 1.9 Consensus size: 128
210766 TTAAAAGGGA
* *
210776 TGTCTTAAAGCATCTAGAAGTCATTTTATGATATTCTTAAATAAATAAATATCCTATTTTTATAA
1 TGTCTTAAAGCACCTAGAAGTCATTTTATAATATTCTTAAATAAATAAATATCCTATTTTTATAA
* *
210841 ATTATATATTAATTTATTTTAATTATTTTTAGAGAAATGTTTTATTAATATTTAGAAATGGGT
66 ATTATACATTAATTTATTTTAATTATTTTTAGAGAAATATTTTATTAATATTTAGAAATGGGT
* *
210904 TGTCTTAAAGCACCTAGAAGTCCTTTTCTAATATTCTTAAATAAATAAATATCCTATTTTTATAA
1 TGTCTTAAAGCACCTAGAAGTCATTTTATAATATTCTTAAATAAATAAATATCCTATTTTTATAA
*
210969 ATTATACATTAATTTATTTTTATTATTTTTAGAGAAATATTTTATTAATATTTA
66 ATTATACATTAATTTATTTTAATTATTTTTAGAGAAATATTTTATTAATATTTA
211023 TTTATTTTTT
Statistics
Matches: 112, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
128 112 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (128 bp):
TGTCTTAAAGCACCTAGAAGTCATTTTATAATATTCTTAAATAAATAAATATCCTATTTTTATAA
ATTATACATTAATTTATTTTAATTATTTTTAGAGAAATATTTTATTAATATTTAGAAATGGGT
Found at i:222964 original size:52 final size:52
Alignment explanation
Indices: 222896--222996 Score: 166
Period size: 52 Copynumber: 1.9 Consensus size: 52
222886 AAGCCATAAC
* * *
222896 TGGATGAATGTATTGTCAAATGTTTTACAAATATCTGTGCAGAAGCCACAGT
1 TGGATGAATGTATTGTCAAATGTTTTACAAACATCTGGGAAGAAGCCACAGT
*
222948 TGGATGAATGTATTGTCAAATGTTTTACGAACATCTGGGAAGAAGCCAC
1 TGGATGAATGTATTGTCAAATGTTTTACAAACATCTGGGAAGAAGCCAC
222997 GGGAAAGGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (52 bp):
TGGATGAATGTATTGTCAAATGTTTTACAAACATCTGGGAAGAAGCCACAGT
Found at i:223426 original size:22 final size:22
Alignment explanation
Indices: 223399--223451 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
223389 ATCTACATTC
223399 TTCAAAGATGATAGATTCTCTA
1 TTCAAAGATGATAGATTCTCTA
*
223421 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTA
223443 TTCAAAGAT
1 TTCAAAGAT
223452 AAAAGCTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTA
Found at i:224197 original size:45 final size:45
Alignment explanation
Indices: 224126--224339 Score: 288
Period size: 45 Copynumber: 4.8 Consensus size: 45
224116 CTATTTCCCA
*
224126 CATC-GTAAG-CCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* **
224169 CATCTGTAAGCCCTTCAGTGCATAATGTTTTCAAAGTCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
*
224214 CATCTGTAAGCCCTTCAGTGTATGATGTTTTCAAAACCTTCGGGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
* * * * *
224259 CATCTGTAAGACCTACAATGCATGATATTTTCAAAACCTTCGCGT
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
** * *
224304 CATCCATAAGTCCTACAGTGCATGATGTTTTCAAAA
1 CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
224340 AAGCCTTCGG
Statistics
Matches: 152, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
43 4 0.03
44 5 0.03
45 143 0.94
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (45 bp):
CATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGT
Found at i:224488 original size:167 final size:166
Alignment explanation
Indices: 224193--224925 Score: 707
Period size: 167 Copynumber: 4.3 Consensus size: 166
224183 TCAGTGCATA
* *
224193 ATGTTTTCAAAGTCTTCGGGTCATCTGTAAGCCCTTCAGTGTATGATGTTTTCAAAACCTTCGGG
1 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGG
* * * *
224258 TCATCTGTAAGACCTACAATGCATGATATTTTCAAAACCTTCGCGTCATCCATAAGTCCTACAGT
66 TCATCTGTAAGCCCTACAATGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGT
*
224323 GCATGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTTG
131 GCAGGATGTTTTC-AAAAAGCCTTCGGGAGCTTTTTG
*
224360 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCGGG
1 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGG
* * *
224425 TCATCTATAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAGT
66 TCATCTGTAAGCCCTACAATGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGT
224490 GCAGGATGTTTTCAAAAAAGCCTTCGGGTCATCTGTAAGCCCTTCATTTCATG
131 GCAGGATGTTTTC-AAAAAGCCTTC-GG------G--AG--C-T--TTT--TG
* *
224543 ATGTTTTCAAAGCCTTAGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGGG
1 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGG
* * * * ** * *
224608 TCATCTGTAAGCCCTATAGTGCATGTTGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGT
66 TCATCTGTAAGCCCTACAATGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGT
* * * *
224673 GCATGATGTTTTC--AAAGCCTTCGGG-TC-ATCTG
131 GCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
* * ** * ** *** *** *** *
224705 TAAG---CCCTAG--TGCAGGATGTTTTCAAAAAGCCTTCAGGAGTTTTTTGATATTTTCAAAA-
1 -ATGTTTTCAAAGCCTTC-GG--GTCATCTGTAAGCC--CTTCAG-TGCATGATGTTTTCAAAAC
*
224764 CTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGAC
59 CTTCGGGTCATCTGTAAGCCCTACAATGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGAC
* *
224829 CTACAGTGCAGGATGCTTTCAAAAAGCCTTTGGGAGCTTTTTG
124 CTACAGTGCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
* * * * *
224872 AT-ATTT-AAAGCCTTCGGGTCATCTGTAAGACCTACAATGCAGGATGTTTTCAAA
1 ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA
224926 TGAGATTTTA
Statistics
Matches: 455, Mismatches: 79, Indels: 68
0.76 0.13 0.11
Matches are distributed among these distances:
158 1 0.00
159 2 0.00
160 3 0.01
161 9 0.02
162 2 0.00
163 92 0.20
164 17 0.04
165 11 0.02
166 10 0.02
167 149 0.33
168 5 0.01
169 2 0.00
173 1 0.00
174 1 0.00
176 2 0.00
178 1 0.00
179 3 0.01
180 9 0.02
181 3 0.01
183 132 0.29
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (166 bp):
ATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGG
TCATCTGTAAGCCCTACAATGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGT
GCAGGATGTTTTCAAAAAGCCTTCGGGAGCTTTTTG
Found at i:224629 original size:138 final size:135
Alignment explanation
Indices: 224359--224732 Score: 590
Period size: 138 Copynumber: 2.8 Consensus size: 135
224349 GGAGCTTTTT
*
224359 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCGG
1 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGG
* * *
224424 GTCATCTATAAGCCCTTCAATGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAG
66 GTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGGGTCATCTATAAGACCTACAG
224489 TGCAG
131 TGCAG
* *
224494 GATGTTTTCAAAAAAGCCTTCGGGTCATCTGTAAGCCCTTCATTTCATGATGTTTTCAAAGCCTT
1 GATGTTTTC---AAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTT
* * *
224559 AGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGGGTCATCTGTAAGCCCTA
63 CGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGGGTCATCTATAAGACCTA
* *
224624 TAGTGCAT
128 CAGTGCAG
*
224632 GTTGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGG
1 GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGG
*
224697 GTCATCTGTAAGCCC-T-AGTGCAGGATGTTTTCAAAA
66 GTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAA
224733 AGCCTTCAGG
Statistics
Matches: 220, Mismatches: 16, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
133 19 0.09
134 1 0.00
135 77 0.35
138 123 0.56
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.33
Consensus pattern (135 bp):
GATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGG
GTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCGGGTCATCTATAAGACCTACAG
TGCAG
Found at i:224675 original size:183 final size:179
Alignment explanation
Indices: 224358--224858 Score: 621
Period size: 183 Copynumber: 2.9 Consensus size: 179
224348 GGGAGCTTTT
* *
224358 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
1 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA-ACTTCG
* *
224423 GGTCATCTATAAGCCCT-TCAATGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTAC
65 GGTCATCTGTAAGCCCTAT-AGTGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTAC
* *
224487 AGTGCAGGATGTTTTCAAAAAAGCCTTCGGGTCATCTGTAAGCCCTTCATTTCA
129 AGTGCAGGATGTTTTC-AAAAAGCCTTCGGGTCATCTGTAAGCCC-T-AGTGCA
224541 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACATTCG
1 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAC-TTCG
* * * * *
224606 GGTCATCTGTAAGCCCTATAGTGCATGTTGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCA
65 GGTCATCTGTAAGCCCTATAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACA
*
224671 GTGCATGATGTTTTC--AAAGCCTTCGGGTCATCTGTAAGCCCTAGTGCA
130 GTGCAGGATGTTTTCAAAAAGCCTTCGGGTCATCTGTAAGCCCTAGTGCA
*
224719 GGATGTTTTCAAAAAGCCTTCA-GG--AGT-T-T------TT---TG-AT-A--TTTTCAAAACT
1 TGATGTTTTC--AAAGCCTT-AGGGTCA-TCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACT
* *
224766 TCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCT
62 TCGGGTCATCTGTAAGCCCTATAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCT
*
224831 ACAGTGCAGGATGCTTTCAAAAAGCCTT
127 ACAGTGCAGGATGTTTTCAAAAAGCCTT
224859 TGGGAGCTTT
Statistics
Matches: 288, Mismatches: 22, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
163 75 0.26
164 10 0.03
165 8 0.03
166 1 0.00
167 2 0.01
168 2 0.01
171 2 0.01
177 1 0.00
178 15 0.05
179 2 0.01
180 36 0.12
181 1 0.00
182 1 0.00
183 131 0.45
184 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.33
Consensus pattern (179 bp):
TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACTTCGG
GTCATCTGTAAGCCCTATAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAG
TGCAGGATGTTTTCAAAAAGCCTTCGGGTCATCTGTAAGCCCTAGTGCA
Found at i:224739 original size:45 final size:45
Alignment explanation
Indices: 224358--224731 Score: 556
Period size: 45 Copynumber: 8.3 Consensus size: 45
224348 GGGAGCTTTT
224358 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
224403 TGATGTTTTCAAATCCTTCGGGTCATCTATAAGCCCTTCAATGCA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * * *
224448 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGACCTACAGTGCA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
224493 GGATGTTTTCAAAAAAGCCTTCGGGTCATCTGTAAGCCCTTCATTTCA
1 TGATGTTTTC---AAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
224541 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
224586 TGATGTTTTCAAAACATTCGGGTCATCTGTAAGCCCTAT-AGTGCA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCT-TCAGTGCA
*
224631 TGTTGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
224676 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCC-T-AGTGCA
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
224719 GGATGTTTTCAAA
1 TGATGTTTTCAAA
224732 AAGCCTTCAG
Statistics
Matches: 298, Mismatches: 26, Indels: 12
0.89 0.08 0.04
Matches are distributed among these distances:
43 18 0.06
44 2 0.01
45 239 0.80
46 1 0.00
48 38 0.13
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:224791 original size:118 final size:120
Alignment explanation
Indices: 224636--224925 Score: 426
Period size: 118 Copynumber: 2.4 Consensus size: 120
224626 GTGCATGTTG
* *
224636 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGTCA
1 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGGGTCA
** * * *
224701 TCTGTAAGCCCT-AGTGCAGGATGTTTTCAAAAAGCCTTCAGGAGTTTTTTGATA
66 TCCATAAGACCTAAGTGCAGGATGCTTTCAAAAAGCCTTCAGGAGCTTTTTGATA
*
224755 TTTTCAAA-ACTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGGGTCA
1 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGGGTCA
**
224819 TCCATAAGACCTACAGTGCAGGATGCTTTCAAAAAGCCTTTGGGAGCTTTTTGATA
66 TCCATAAGACCTA-AGTGCAGGATGCTTTCAAAAAGCCTTCAGGAGCTTTTTGATA
* * *
224875 -TTT-AAAGCCTTCGGGTCATCTGTAAGACCTACAATGCAGGATGTTTTCAAA
1 TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAA
224926 TGAGATTTTA
Statistics
Matches: 154, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
118 65 0.42
119 51 0.33
120 38 0.25
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (120 bp):
TTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGGGTCA
TCCATAAGACCTAAGTGCAGGATGCTTTCAAAAAGCCTTCAGGAGCTTTTTGATA
Found at i:224805 original size:44 final size:45
Alignment explanation
Indices: 224750--224852 Score: 145
Period size: 45 Copynumber: 2.3 Consensus size: 45
224740 AGGAGTTTTT
* ** *
224750 TGATATTTTCAAAA-CTTCGGGTCATCTGTAAGCCCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
224794 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
* *
224839 GGATGCTTTCAAAA
1 TGATGTTTTCAAAA
224853 AGCCTTTGGG
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 13 0.25
45 39 0.75
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
Found at i:225178 original size:3 final size:3
Alignment explanation
Indices: 225170--225222 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
225160 TAATTTTTCA
225170 TAT TAT TA- TAT TA- TAT TA- TAT ATAT TAT ATAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT TAT TAT TAT
225213 TAT TAT TAT T
1 TAT TAT TAT T
225223 TAAATAAATA
Statistics
Matches: 44, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
2 8 0.18
3 30 0.68
4 6 0.14
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:225183 original size:5 final size:5
Alignment explanation
Indices: 225173--225218 Score: 60
Period size: 5 Copynumber: 9.2 Consensus size: 5
225163 TTTTTCATAT
225173 TATTA TATTA TATTA TA-TA TATTA TA-TA TTATTA TATTA TTATTA T
1 TATTA TATTA TATTA TATTA TATTA TATTA -TATTA TATTA -TATTA T
225219 TATTTAAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
4 6 0.16
5 24 0.65
6 7 0.19
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATTA
Found at i:234106 original size:165 final size:164
Alignment explanation
Indices: 233795--234124 Score: 594
Period size: 165 Copynumber: 2.0 Consensus size: 164
233785 GGACTCATCG
233795 CCAAACACTGAATTTTTCAGACTTAGTCAAATTAGAGCAAGTCTCAAGTATTTTTGTGGGCATGT
1 CCAAACACTGAATTTTTCAGACTTAGTCAAATTAGAGCAAGTCTCAAGTATTTTTGTGGGCATGT
233860 ATTGTCATAGACCTTGTGTAATTCGATTCGTAAATTTATTTTGTAACTAAGTATTTGAGATGATT
66 ATTGTCATAGACCTTGTGTAATTCGATTCGTAAA-TTATTTTGTAACTAAGTATTTGAGATGATT
233925 GATGGGAACTCCTACTTATGTAAACTATATATTTT
130 GATGGGAACTCCTACTTATGTAAACTATATATTTT
233960 CCAAACACTGAA-TTTTCAGACTTAGTCAATATTAGAGCAAGTCTCAAGTATTTTTGTGGGCATG
1 CCAAACACTGAATTTTTCAGACTTAGTCAA-ATTAGAGCAAGTCTCAAGTATTTTTGTGGGCATG
234024 TATTGTCATAGACCCTTGTGTAATTCGATTCGTAAA-T-TTTTGTAACTAAGTATTTGAGATTGA
65 TATTGTCATAGA-CCTTGTGTAATTCGATTCGTAAATTATTTTGTAACTAAGTATTTGAGA-TGA
234087 TTGATGGGAACTCCCTACTTATGTAAACTATATATTTT
128 TTGATGGGAACT-CCTACTTATGTAAACTATATATTTT
234125 GGATTAAACT
Statistics
Matches: 161, Mismatches: 0, Indels: 8
0.95 0.00 0.05
Matches are distributed among these distances:
163 22 0.14
164 33 0.20
165 83 0.52
166 23 0.14
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (164 bp):
CCAAACACTGAATTTTTCAGACTTAGTCAAATTAGAGCAAGTCTCAAGTATTTTTGTGGGCATGT
ATTGTCATAGACCTTGTGTAATTCGATTCGTAAATTATTTTGTAACTAAGTATTTGAGATGATTG
ATGGGAACTCCTACTTATGTAAACTATATATTTT
Found at i:235686 original size:3 final size:3
Alignment explanation
Indices: 235678--235729 Score: 77
Period size: 3 Copynumber: 16.7 Consensus size: 3
235668 TTCAGTTTGC
*
235678 TAT TAT TAT TAT ACAT TAT TAT TAT TAT TAT TATT TAT TAT TAT TAT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
235725 TAT TA
1 TAT TA
235730 AATAAATATT
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
3 40 0.89
4 5 0.11
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:235699 original size:16 final size:15
Alignment explanation
Indices: 235678--235729 Score: 68
Period size: 16 Copynumber: 3.3 Consensus size: 15
235668 TTCAGTTTGC
235678 TATTATTATTATACAT
1 TATTATTATTAT-CAT
*
235694 TATTATTATTATTAT
1 TATTATTATTATCAT
*
235709 TATTTATTATTATTAT
1 TA-TTATTATTATCAT
235725 TATTA
1 TATTA
235730 AATAAATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
15 7 0.21
16 27 0.79
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (15 bp):
TATTATTATTATCAT
Found at i:235706 original size:22 final size:22
Alignment explanation
Indices: 235678--235729 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
235668 TTCAGTTTGC
235678 TATTATTATTATACATTATTAT
1 TATTATTATTATACATTATTAT
**
235700 TATTATTATTATTTATTATTAT
1 TATTATTATTATACATTATTAT
235722 TATTATTA
1 TATTATTA
235730 AATAAATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TATTATTATTATACATTATTAT
Found at i:235728 original size:19 final size:20
Alignment explanation
Indices: 235678--235729 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
235668 TTCAGTTTGC
235678 TATTATTATTA-TACATTAT
1 TATTATTATTATTACATTAT
*
235697 TATTATTATTATTA-TTTAT
1 TATTATTATTATTACATTAT
235716 TATTATTATTATTA
1 TATTATTATTATTA
235730 AATAAATATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 29 0.94
20 2 0.06
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TATTATTATTATTACATTAT
Found at i:237508 original size:123 final size:119
Alignment explanation
Indices: 237282--237513 Score: 328
Period size: 121 Copynumber: 1.9 Consensus size: 119
237272 TTAAAAGGGC
*
237282 TGTCTTAAAGCATAGAAGTCATTTTCTGATTTCTAAATAAATAAATATCCTATTTTATAAAATTT
1 TGTCTTAAAGCATAGAAGTCATTTTCTAATTTCTAAATAAATAAATATCCTATTTTATAAAATTT
* *
237347 ATTAATTTATTTTAATTATTTTAGAGAATGTTTATTAATATTTAGAAATGGGTT
66 AATAATTTATTTTAATTATTTTAGAGAATATTTATTAATATTTAGAAATGGGTT
237401 TGTCTTAAAGCACCTAGAAGTCATTTTCTAATATTCTTAAATAAAT-AA-ATCCTATTTT-TATA
1 TGTCTTAAAGCA--TAGAAGTCATTTTCTAAT-TTC-TAAATAAATAAATATCCTATTTTATA-A
*
237463 AATTATACATAA-TTATTTTTATTATTTTAGAGAAATATTTATTAATATTTA
61 AATT-TA-ATAATTTATTTTAATTATTTTAGAG-AATATTTATTAATATTTA
237514 TTTATTTTTT
Statistics
Matches: 101, Mismatches: 4, Indels: 12
0.86 0.03 0.10
Matches are distributed among these distances:
119 12 0.12
120 2 0.02
121 32 0.32
122 26 0.26
123 29 0.29
ACGTcount: A:0.38, C:0.07, G:0.08, T:0.47
Consensus pattern (119 bp):
TGTCTTAAAGCATAGAAGTCATTTTCTAATTTCTAAATAAATAAATATCCTATTTTATAAAATTT
AATAATTTATTTTAATTATTTTAGAGAATATTTATTAATATTTAGAAATGGGTT
Found at i:242766 original size:141 final size:137
Alignment explanation
Indices: 242592--242872 Score: 435
Period size: 141 Copynumber: 2.0 Consensus size: 137
242582 ACCCAAAAAG
*
242592 TCTGAGGTCAACTTTGATTAAAGTGATTTGTTTTTAGT-AAAATTCATTTACCCT-TTTTTCACC
1 TCTGAGGTCAACTTTGATTAAAGTGATTTGTTTTTAGTAAAAATTCATTTACCATCTTTTTCACC
242655 CA-TGTCGCTCCTGTA-TTTTTTCTATTTCTCTTTCGATACTTCACCATCACTACTAATCTTATT
66 CAGTGTCGCTCCTGTATTTTTTTCTATTTCTC-TTC--TACTTCACCAT--CTACTAATCTTATT
242718 CCTTCAATTGTT
126 CCTTCAATTGTT
242730 TCTGAGGTCTAACTGTGTGATTAAAGTGATTTGTTTTTAGTAAAAATTCATTTACCATCTTTTTC
1 TCTGAGGTC-AACT-T-TGATTAAAGTGATTTGTTTTTAGTAAAAATTCATTTACCATCTTTTTC
242795 ACCCATGTGTCGCTCCTGTATTTTTTTCTATTTCTCTTCTACTTCACCATCTACTAATCTTATTC
63 ACCCA-GTGTCGCTCCTGTATTTTTTTCTATTTCTCTTCTACTTCACCATCTACTAATCTTATTC
*
242860 CTTCACTTGTT
127 CTTCAATTGTT
242871 TC
1 TC
242873 GTTGGGTATT
Statistics
Matches: 133, Mismatches: 2, Indels: 13
0.90 0.01 0.09
Matches are distributed among these distances:
138 9 0.07
139 4 0.03
140 1 0.01
141 51 0.38
142 15 0.11
143 22 0.17
145 16 0.12
146 15 0.11
ACGTcount: A:0.21, C:0.22, G:0.10, T:0.47
Consensus pattern (137 bp):
TCTGAGGTCAACTTTGATTAAAGTGATTTGTTTTTAGTAAAAATTCATTTACCATCTTTTTCACC
CAGTGTCGCTCCTGTATTTTTTTCTATTTCTCTTCTACTTCACCATCTACTAATCTTATTCCTTC
AATTGTT
Found at i:247103 original size:25 final size:25
Alignment explanation
Indices: 247037--247107 Score: 66
Period size: 25 Copynumber: 3.1 Consensus size: 25
247027 GTTTTTCATA
247037 TCAGTGCATGATGTTTTCAAAGCCT
1 TCAGTGCATGATGTTTTCAAAGCCT
* *
247062 TC-GGGTCAT-CTG---T--AAGCCT
1 TCAGTG-CATGATGTTTTCAAAGCCT
247081 TCAGTGCATGATGTTTTCAAAGCCT
1 TCAGTGCATGATGTTTTCAAAGCCT
247106 TC
1 TC
247108 GGGTCATCTG
Statistics
Matches: 34, Mismatches: 4, Indels: 16
0.63 0.07 0.30
Matches are distributed among these distances:
19 11 0.32
20 4 0.12
21 1 0.03
23 1 0.03
24 4 0.12
25 13 0.38
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (25 bp):
TCAGTGCATGATGTTTTCAAAGCCT
Found at i:247142 original size:45 final size:45
Alignment explanation
Indices: 247037--247237 Score: 305
Period size: 45 Copynumber: 4.5 Consensus size: 45
247027 GTTTTTCATA
*
247037 TCAGTGCATGATGTTTTCAAAGCCTTCGGGTCATCTGTAAG-CCT
1 TCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCT
* *
247081 TCAGTGCATGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCT
1 TCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCT
*
247126 TCAGTGTATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCT
1 TCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCT
* * * **
247171 ACAATGCATGATGTTTTCAAAACCTTCGCGTCATCCATAAGACCT
1 TCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCT
*
247216 ACAGTGCATGATGTTTTCAAAA
1 TCAGTGCATGATGTTTTCAAAA
247238 AAGCCTTCAG
Statistics
Matches: 146, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
44 41 0.28
45 105 0.72
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.33
Consensus pattern (45 bp):
TCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCT
Found at i:247307 original size:45 final size:45
Alignment explanation
Indices: 247256--247404 Score: 226
Period size: 45 Copynumber: 3.3 Consensus size: 45
247246 AGGAGCTTTT
* * *
247256 TGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCA
*
247301 TGATGTTTTCAAATCCTTCGGGTCATCTATAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCA
* * *
247346 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCA
*
247391 GGATGTTTTCAAAA
1 TGATGTTTTCAAAA
247405 AAGCCTTCGG
Statistics
Matches: 96, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTATAAGCCCTTCAGTGCA
Found at i:247351 original size:122 final size:122
Alignment explanation
Indices: 247134--247359 Score: 362
Period size: 122 Copynumber: 1.9 Consensus size: 122
247124 CTTCAGTGTA
247134 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
247199 CGTCATCCATAAGACCTACAGTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTT
66 CGTCATCCATAAGACCTACAGTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTT
* * * * * *
247256 TGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
* * * *
247321 GGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAA
66 CGTCATCCATAAGACCTACAGTGCATGATGTTTTCAAAA
247360 CCTTCGGGTC
Statistics
Matches: 94, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
122 94 1.00
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.34
Consensus pattern (122 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCG
CGTCATCCATAAGACCTACAGTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTT
Found at i:247365 original size:167 final size:167
Alignment explanation
Indices: 247089--247567 Score: 782
Period size: 167 Copynumber: 2.9 Consensus size: 167
247079 CTTCAGTGCA
* *
247089 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGTATGATGTTTTCAAAACCTTCG
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
* * * *
247154 GGTCATCTGTAAGACCTACAATGCATGATGTTTTCAAAACCTTCGCGTCATCCATAAGACCTACA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
247219 GTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTT
131 GTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTT
*
247256 TGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
*
247321 GGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
66 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
* *
247386 GTGCAGGATGTTTTCAAAAAAGCCTTCGGGAGCTTTT
131 GTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTT
* *
247423 TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTTCATGATGTTTTCAAAGT-CTTC
1 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAA-TCCTTC
** *
247487 GGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAAAATTCGGGTCATCTC-TAAGCCCTA
65 GGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATC-CATAAGACCTA
*
247551 CACTGCATGATGTTTTC
129 CAGTGCATGATGTTTTC
247568 GAAGCCTTCG
Statistics
Matches: 291, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
167 289 0.99
168 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.19, T:0.34
Consensus pattern (167 bp):
TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
GTGCATGATGTTTTCAAAAAAGCCTTCAGGAGCTTTT
Found at i:247472 original size:45 final size:45
Alignment explanation
Indices: 247423--247660 Score: 359
Period size: 45 Copynumber: 5.3 Consensus size: 45
247413 GGGAGCTTTT
*
247423 TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTTCA
1 TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
247468 TGATGTTTTCAAAGTCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * * * *
247513 TGATGTTTTCAAAAAATTCGGGTCATCTCTAAGCCCTACACTGCA
1 TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* *
247558 TGATGTTTTCGAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTGCA
* * *
247603 TGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACAGTGCA
1 TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTGCA
*
247648 GGATGTTTTCAAA
1 TGATGTTTTCAAA
247661 AAGCCTTCAG
Statistics
Matches: 174, Mismatches: 19, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.34
Consensus pattern (45 bp):
TGATGTTTTCAAAGACTTCGGGTCATCTGTAAGCCCTTCAGTGCA
Found at i:247519 original size:257 final size:254
Alignment explanation
Indices: 247256--247790 Score: 791
Period size: 257 Copynumber: 2.1 Consensus size: 254
247246 AGGAGCTTTT
* * * *
247256 TGATGTTTTCAAAGCCTTTGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAATCCTTCG
1 TGATGTTTTCAAAGCCTTTGGGTCATCTCTAAGCCCTACACTGCATGATGTTTTCAAAGCCTTCG
247321 GGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
66 GGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
* *
247386 GTGCAGGATGTTTTCAAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAAAGACTTCGGGTCATCT
131 GTGCAGGATGTTTTC-AAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAA-ACTTCGGGTCATCT
* * ** ** * *
247451 GTAAGCCCTTCAGTTCATGATGTTTTCAAAGTCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
194 GTAAGCCCTACAGTGC-TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
*** * *
247513 TGATGTTTTCAAAAAATTCGGGTCATCTCTAAGCCCTACACTGCATGATGTTTTCGAAGCCTTCG
1 TGATGTTTTCAAAGCCTTTGGGTCATCTCTAAGCCCTACACTGCATGATGTTTTCAAAGCCTTCG
* * **
247578 GGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCGGGTCATCTGTAAGACCTACA
66 GGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
*
247643 GTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAACCTTCGGGTCATCTGT
131 GTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAAACTTCGGGTCATCTGT
247708 AAGCCCTACAGTGCTGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
196 AAGCCCTACAGTGCTGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
* *
247767 GGATGCTTTCAAAAAGCCTTTGGG
1 TGATGTTTTC--AAAGCCTTTGGG
247791 AGATTTTTGA
Statistics
Matches: 246, Mismatches: 30, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
254 47 0.19
255 27 0.11
256 40 0.16
257 132 0.54
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (254 bp):
TGATGTTTTCAAAGCCTTTGGGTCATCTCTAAGCCCTACACTGCATGATGTTTTCAAAGCCTTCG
GGTCATCTATAAGCCCTTCAGTGCATGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACA
GTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTTTGATATTTTCAAAACTTCGGGTCATCTGT
AAGCCCTACAGTGCTGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
Found at i:247740 original size:44 final size:45
Alignment explanation
Indices: 247679--247780 Score: 136
Period size: 44 Copynumber: 2.3 Consensus size: 45
247669 AGGAGCTTTT
* ** *
247679 TGATATTTTC-AAACCTTCGGGTCATCTGTAAGCCCTACAGTGC-
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
247722 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
* *
247767 GGATGCTTTCAAAA
1 TGATGTTTTCAAAA
247781 AGCCTTTGGG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
43 9 0.18
44 30 0.59
45 12 0.24
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCCATAAGACCTACAGTGCA
Found at i:247784 original size:119 final size:120
Alignment explanation
Indices: 247558--247853 Score: 436
Period size: 119 Copynumber: 2.5 Consensus size: 120
247548 CTACACTGCA
* * * *
247558 TGATGTTTTCGAAGCCTTCGGGTCATCTGTAAGCCCTTCAGTGCATGATGTTTTCAAAGCCTTCG
1 TGATATTTTC-AAACCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCG
** * *
247623 GGTCATCTGTAAGACCTACAGTGCAGGATGTTTTCAAAAAGCCTTCAGGAGCTTTT
65 GGTCATCCATAAGACCTACAGTGCAGGATGCTTTCAAAAAGCCTTCAGGAGATTTT
247679 TGATATTTTCAAACCTTCGGGTCATCTGTAAGCCCTACAGTGC-TGATGTTTTCAAAACCTTCGG
1 TGATATTTTCAAACCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGG
**
247743 GTCATCCATAAGACCTACAGTGCAGGATGCTTTCAAAAAGCCTTTGGGAGATTTT
66 GTCATCCATAAGACCTACAGTGCAGGATGCTTTCAAAAAGCCTTCAGGAGATTTT
* * *
247798 TGATA-TTT-AAAGCCTTCGGGTCATCTGTAAGACCTACAATGCATGATGGTTTCAAA
1 TGATATTTTCAAA-CCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAA
247854 TGAGATTTTA
Statistics
Matches: 160, Mismatches: 13, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
117 3 0.02
118 31 0.19
119 86 0.54
120 31 0.19
121 9 0.06
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.32
Consensus pattern (120 bp):
TGATATTTTCAAACCTTCGGGTCATCTGTAAGCCCTACAGTGCATGATGTTTTCAAAACCTTCGG
GTCATCCATAAGACCTACAGTGCAGGATGCTTTCAAAAAGCCTTCAGGAGATTTT
Found at i:248113 original size:3 final size:3
Alignment explanation
Indices: 248105--248166 Score: 106
Period size: 3 Copynumber: 20.0 Consensus size: 3
248095 TTTTCATCTA
248105 ATT ATT ATT ATT ATT ATT ATT ATAT ATT ATT ATT ATAT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT AT-T ATT ATT ATT
248152 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
248167 TAAATAAATA
Statistics
Matches: 57, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
3 51 0.89
4 6 0.11
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Done.