genome.fa.s3410.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003410.1 Hibiscus syriacus cultivar Beakdansim tig00007182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91873

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95--139	22	2.1	22	95	4	83	44	24	8	22	1.81
1054--1088	17	2.1	17	94	0	61	51	2	5	40	1.40
3952--3990	21	1.9	20	84	5	51	53	0	10	35	1.35
6264--6420	60	2.6	59	78	7	174	40	8	3	47	1.52
6395--6658	96	2.7	95	80	5	287	43	10	6	38	1.66
6584--6732	40	3.9	40	74	15	127	43	9	5	41	1.60
6777--6970	58	3.4	57	77	9	214	45	8	4	41	1.54
6756--6970	115	1.9	115	85	5	301	45	9	5	40	1.59
6891--7079	102	1.9	103	86	2	274	44	9	4	41	1.56
6976--7251	58	4.7	58	81	7	224	42	11	8	37	1.71
7333--7495	45	3.8	40	79	7	121	41	11	11	34	1.78
7357--7526	45	3.8	44	81	4	196	41	11	12	34	1.80
7498--7557	31	1.9	31	90	6	95	48	16	13	21	1.80
8259--8285	2	13.5	2	100	0	54	51	0	0	48	1.00
8332--8386	27	2.0	28	85	3	76	36	20	21	21	1.95
16363--16542	96	1.9	96	83	4	238	35	12	17	34	1.88
24284--24366	27	3.1	27	98	0	157	21	15	19	43	1.88
28437--28481	23	1.9	24	86	4	65	28	15	26	28	1.96
29891--29923	16	1.9	17	88	11	50	30	18	0	51	1.46
32382--32466	32	2.7	31	83	1	107	37	14	15	32	1.87
32382--32475	31	3.0	31	82	4	109	38	13	17	30	1.88
32412--32662	136	1.9	135	82	2	315	37	15	15	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32583--32785	32	6.3	32	82	4	248	33	11	22	33	1.89
38787--38869	25	3.2	26	78	13	82	54	0	0	45	0.99
38842--38870	2	15.0	2	92	7	51	51	0	0	48	1.00
39602--39656	19	2.9	19	74	15	60	65	1	9	23	1.31
39746--39813	23	3.1	21	77	14	59	69	0	2	27	1.03
39748--39833	22	3.7	23	75	13	77	63	0	4	31	1.14
39933--39960	2	14.0	2	100	0	56	50	0	0	50	1.00
40065--40111	22	2.0	24	88	8	71	72	0	2	25	0.96
40529--40623	39	2.5	37	80	6	100	30	13	13	42	1.83
41364--42553	106	11.3	106	90	1	1784	22	17	24	34	1.96
44075--44134	16	3.8	16	82	10	70	1	15	6	76	1.06
48575--48692	22	5.1	24	72	18	74	66	0	3	28	1.13
48666--48695	15	2.0	15	93	0	51	76	0	0	23	0.78
48756--48788	2	16.5	2	100	0	66	51	0	0	48	1.00
48845--48926	29	2.8	30	79	7	78	67	1	3	28	1.15
49893--50148	132	1.9	132	85	1	352	25	14	12	46	1.80
50015--50313	138	2.2	139	83	3	379	27	11	14	47	1.78
51889--51950	27	2.3	27	80	0	70	9	16	14	59	1.60
52748--52805	31	1.9	30	85	3	80	29	3	8	58	1.44
52780--52812	16	2.0	17	88	5	50	27	3	6	63	1.32
53723--53768	21	2.4	18	82	13	56	43	0	0	56	0.99
62773--62818	23	2.0	24	91	4	76	17	2	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65633--65678	20	2.3	20	84	0	56	50	15	8	26	1.73
67213--67271	22	2.8	21	74	5	55	66	5	1	27	1.22
68012--68051	19	2.1	19	100	0	80	15	55	0	30	1.41
69021--69070	5	9.2	5	83	12	55	76	0	2	22	0.89
69004--69070	18	3.6	19	76	11	59	74	0	2	22	0.95
69009--69068	6	10.3	6	80	7	54	75	0	3	21	0.95
69009--69082	23	3.3	22	80	12	71	71	1	4	22	1.10
69279--69597	131	2.4	130	79	4	318	28	17	21	31	1.96
69516--69687	91	1.9	92	87	1	256	33	15	19	31	1.93
69608--72103	132	18.9	133	82	4	2577	30	17	20	30	1.96
69389--69821	224	1.9	224	79	5	482	31	16	20	31	1.95
69283--69985	357	2.0	353	80	4	808	30	17	20	31	1.96
69608--72103	658	3.8	658	90	1	3691	30	17	20	30	1.96
69608--72103	790	3.2	784	83	4	2921	30	17	20	30	1.96
72846--72960	45	2.6	45	81	10	121	48	18	12	20	1.80
74518--74543	13	2.0	13	100	0	52	23	0	46	30	1.53
74531--74618	43	2.0	44	95	2	160	29	21	14	34	1.93
76348--76380	13	2.6	13	85	4	50	48	18	18	15	1.81
80437--80466	5	6.0	5	92	0	51	76	0	3	20	0.92
83403--83518	15	7.3	15	79	13	126	44	0	2	52	1.14
83471--83781	22	13.2	22	63	24	86	33	0	13	52	1.41
83483--83518	14	2.5	14	95	4	63	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83416--83572	69	2.3	67	83	7	194	42	0	6	51	1.27
83498--84223	54	13.4	54	72	18	532	33	0	13	52	1.42
83543--83647	32	3.7	31	75	25	131	34	0	13	52	1.41
83574--83617	21	2.1	21	100	0	88	34	0	13	52	1.41
83595--83908	80	3.9	80	94	3	556	31	0	15	53	1.42
83680--83731	18	2.8	19	78	18	65	32	0	11	55	1.36
83595--83908	164	1.9	160	94	2	556	31	0	15	53	1.42
83782--83829	22	2.4	18	73	23	51	33	0	14	52	1.42
83838--83945	32	3.7	32	72	23	128	34	0	12	52	1.40
83871--83913	22	2.0	22	90	0	68	34	0	11	53	1.37
83759--84079	134	2.4	134	98	0	624	33	0	14	52	1.42
83916--83963	22	2.4	18	73	23	51	33	0	14	52	1.42
83893--84208	80	3.9	80	87	6	481	33	0	13	52	1.44
83972--84111	32	4.7	32	81	16	192	34	0	12	52	1.40
84005--84047	22	2.0	22	100	0	86	34	0	13	51	1.42
83893--84223	166	2.0	166	95	0	590	34	0	13	52	1.43
83759--84159	134	3.0	133	89	5	472	33	0	14	52	1.44
84238--84296	31	1.9	31	92	0	100	42	10	6	40	1.65
85238--85293	23	2.4	24	82	8	62	30	0	5	64	1.16
86811--86853	21	2.0	21	91	8	70	20	9	2	67	1.30
90463--91243	106	7.4	106	95	0	1373	33	25	18	22	1.96
91699--91750	24	2.2	24	83	13	63	25	0	5	69	1.10

Tables:   1

The End!