Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003413.1 Hibiscus syriacus cultivar Beakdansim tig00007190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66413

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6672--6734
33
1.9
33
87
6
92
39
3
4
52
1.38
6646--6873
34
6.5
35
71
18
129
43
6
4
45
1.50
6867--6901
14
2.5
14
90
0
61
40
0
0
60
0.97
11229--11325
3
31.7
3
78
8
97
58
0
1
40
1.05
11580--11660
43
2.0
40
85
9
110
18
23
9
48
1.78
11600--12617
113
8.9
113
84
5
1181
29
19
14
37
1.90
11600--12609
231
4.4
227
89
5
1358
29
19
14
37
1.91
13449--13921
83
5.7
83
95
0
829
36
23
13
25
1.92
14704--14741
16
2.4
16
82
8
51
57
7
5
28
1.49
15064--15124
8
7.2
8
80
10
68
0
16
0
83
0.64
15073--15124
7
7.3
7
80
10
52
0
15
0
84
0.62
15072--15124
17
3.1
17
86
8
72
0
15
0
84
0.61
15064--15119
24
2.3
25
87
3
78
0
16
0
83
0.64
27872--27962
3
29.7
3
81
8
103
60
0
1
38
1.04
38254--38379
47
2.8
46
82
5
141
29
21
7
41
1.81
41943--42016
37
2.0
36
82
7
87
66
1
9
22
1.29
41973--42010
20
1.9
20
88
0
58
63
2
7
26
1.35
42074--42104
2
15.5
2
100
0
62
51
0
0
48
1.00
46895--46995
14
6.9
15
76
12
54
3
16
1
77
1.02
46894--46987
8
11.2
8
66
20
50
3
17
2
77
0.99
46902--46960
21
2.7
22
77
15
68
1
20
3
74
1.05
46928--47000
13
5.9
11
74
19
56
4
15
1
79
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46948--47002
28
2.0
28
89
7
85
5
14
0
80
0.89
46948--47002
13
3.9
14
88
11
78
5
14
0
80
0.89
46876--47005
15
8.1
16
75
19
103
5
18
1
74
1.08
49807--49932
47
2.8
46
82
5
141
29
21
7
41
1.81
53607--53631
2
12.5
2
100
0
50
52
0
0
48
1.00
54038--54141
36
2.8
36
82
2
127
31
15
13
39
1.86
54841--55891
106
10.0
106
89
3
1554
23
17
24
33
1.96
56445--56526
24
3.5
24
74
8
62
45
4
15
34
1.68
56718--56794
22
3.5
22
94
0
136
20
12
27
38
1.89
57414--57452
19
2.2
18
90
9
62
0
12
5
82
0.83
57414--57455
17
2.5
17
85
11
59
0
11
7
80
0.88
62081--62154
37
2.0
36
82
7
87
66
1
9
22
1.29
62111--62148
20
1.9
20
88
0
58
63
2
7
26
1.35
62622--62718
36
2.6
36
85
3
113
31
15
12
40
1.84
62914--63624
8
96.8
8
67
25
131
37
8
1
52
1.41
62914--63100
22
8.0
23
73
16
138
37
8
1
52
1.39
62914--63034
52
2.4
50
80
12
147
37
6
1
54
1.36
62914--62998
30
2.8
30
74
10
75
38
5
2
52
1.38
62978--63613
14
46.5
14
67
24
116
37
8
1
52
1.41
63083--63155
29
2.7
26
86
12
94
35
5
4
54
1.42
63074--63236
68
2.4
67
88
7
231
37
7
3
52
1.45
63152--63223
27
2.7
27
81
10
76
38
5
2
52
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63229--63481
22
11.4
22
74
11
180
35
10
1
52
1.44
63304--63489
29
6.1
29
70
26
111
35
9
1
53
1.44
63239--63547
92
3.3
95
88
7
377
36
9
0
53
1.41
63322--63499
36
4.6
36
72
22
116
35
9
1
53
1.41
63433--63621
2
95.0
2
73
18
146
41
5
0
52
1.28
63406--63521
36
3.2
35
82
11
119
35
7
1
55
1.39
63780--63817
20
1.9
20
94
0
67
28
15
0
55
1.41
64289--64365
32
2.4
32
82
10
95
33
23
16
25
1.96
65120--65169
21
2.4
21
86
3
66
40
16
24
20
1.91
65158--65333
20
8.7
20
88
3
167
31
26
18
23
1.97
65178--65233
21
2.7
21
100
0
112
44
25
16
14
1.84
66074--66127
24
2.2
24
87
6
74
22
14
20
42
1.88

Tables:   1

The End!