Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003414.1 Hibiscus syriacus cultivar Beakdansim tig00007191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72252

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3158--3212
27
2.0
28
85
3
76
21
21
20
36
1.95
3977--4040
31
2.1
31
91
5
103
23
12
17
46
1.81
4029--4158
45
2.9
45
83
8
160
37
13
10
38
1.79
4277--4555
58
4.8
58
80
6
217
38
8
11
41
1.73
4454--4639
101
1.8
101
85
4
259
41
4
10
44
1.58
4556--4788
57
4.1
58
76
10
210
41
4
9
44
1.59
4560--4774
115
1.9
115
85
5
301
40
4
9
45
1.58
4401--4706
158
1.9
159
81
4
368
40
5
9
44
1.61
4343--4770
216
2.0
215
79
9
469
40
6
10
43
1.63
4559--4753
58
3.4
57
77
9
216
41
3
9
45
1.53
4550--4788
115
2.1
115
81
10
290
41
4
10
44
1.58
4798--4942
40
3.8
39
73
14
122
43
4
9
42
1.56
4873--5136
96
2.7
98
77
8
270
38
6
10
44
1.65
5111--5264
58
2.6
59
80
9
163
48
3
9
38
1.53
7540--7578
21
1.9
20
84
5
51
35
10
0
53
1.35
10452--10486
17
2.1
17
94
0
61
40
5
2
51
1.40
11359--11405
16
2.8
17
84
15
55
6
8
10
74
1.22
11676--11712
6
6.5
6
96
3
60
54
0
27
18
1.44
13332--13356
3
8.3
3
100
0
50
0
32
0
68
0.90
17902--17972
22
3.2
22
100
0
142
25
19
18
36
1.94
26421--26467
23
2.0
23
87
0
67
48
12
21
17
1.79
26431--26475
23
2.0
23
95
0
81
42
13
22
22
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27006--27126
3
39.7
3
82
9
147
36
0
1
61
1.06
29072--29123
20
2.6
21
76
11
56
26
7
0
65
1.20
37229--37393
75
2.2
75
97
1
312
32
15
21
30
1.94
37386--37547
74
2.2
74
84
4
202
33
16
20
29
1.95
38865--38944
22
3.6
22
70
0
70
36
12
11
40
1.79
39613--40786
76
15.5
76
98
0
2251
21
22
21
34
1.97
40913--41037
3
40.7
3
84
7
162
36
0
1
61
1.06
41750--41778
13
2.2
13
100
0
58
0
31
62
6
1.22
44017--44066
25
1.9
27
88
8
77
36
4
0
60
1.16
45716--45745
6
5.0
6
100
0
60
50
0
0
50
1.00
49216--49248
16
2.0
17
94
5
59
30
21
0
48
1.50
50073--50130
24
2.5
24
94
2
100
25
12
6
55
1.61
53400--53434
18
2.0
17
88
5
52
51
0
0
48
1.00
55044--55086
17
2.5
17
96
0
77
23
4
20
51
1.66
61368--61403
19
1.9
19
88
5
56
22
19
0
58
1.40
61471--61503
7
4.9
7
85
7
50
57
0
0
42
0.98
66879--66930
20
2.6
19
90
6
77
34
17
28
19
1.94
66954--66995
19
2.2
19
87
8
59
28
16
28
26
1.97
67468--67586
59
2.0
59
96
0
220
38
12
22
26
1.90

Tables:   1

The End!