Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003416.1 Hibiscus syriacus cultivar Beakdansim tig00007194_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63971

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5008--5039
2
16.5
2
93
6
57
50
0
0
50
1.00
5199--5304
24
4.5
24
72
1
88
46
16
13
23
1.83
9672--9747
17
4.4
17
71
3
62
44
13
19
22
1.85
10186--10260
37
2.0
37
100
0
150
34
24
13
28
1.93
10508--10539
3
10.7
3
100
0
64
31
0
0
68
0.90
12226--12286
29
2.2
27
83
13
72
39
6
1
52
1.37
19408--19459
21
2.5
21
96
0
95
30
17
21
30
1.96
23170--23206
6
6.5
6
87
12
60
16
0
0
83
0.64
23150--23205
11
4.9
11
86
6
76
16
3
1
78
0.97
23170--23206
17
2.2
17
90
9
58
16
0
0
83
0.64
23162--23216
22
2.6
21
77
11
67
18
3
1
76
1.02
27209--27254
19
2.6
18
80
13
51
19
6
4
69
1.28
28894--28961
20
3.5
20
80
13
72
27
25
19
27
1.98
28913--28961
19
2.6
19
80
9
64
28
26
18
26
1.98
30245--30334
39
2.3
39
88
0
126
30
24
30
15
1.96
36975--37070
39
2.5
39
85
0
138
31
27
27
14
1.95
39563--39598
17
2.1
17
100
0
72
61
0
33
5
1.19
39563--39613
17
2.8
19
81
16
56
58
0
35
5
1.22
39576--39625
12
3.9
13
86
5
59
56
0
38
6
1.24
39564--39647
43
2.0
42
81
11
100
57
0
35
7
1.26
39571--39637
12
5.5
13
73
19
56
56
0
37
5
1.24
41938--41965
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46496--46524
5
5.8
5
100
0
58
20
20
20
37
1.94
46869--47003
63
2.1
63
83
2
164
27
14
14
43
1.84
51751--51837
28
3.1
28
73
20
74
44
8
6
40
1.61
51751--51837
29
3.1
28
77
11
88
44
8
6
40
1.61
51928--52042
30
3.8
30
76
11
117
45
9
7
37
1.66
52104--52155
3
17.3
3
100
0
104
32
0
0
67
0.91
54217--54277
9
6.6
9
76
12
61
26
1
0
72
0.94
54327--54407
32
2.5
33
88
8
121
37
20
14
27
1.92
54922--54982
7
8.9
7
83
16
83
27
0
0
72
0.85
54923--54979
4
15.2
4
82
17
70
26
0
0
73
0.83
54923--54979
11
5.5
11
80
19
77
26
0
0
73
0.83
54922--54987
10
6.7
10
79
20
77
27
1
0
71
0.95
54930--54988
19
3.1
19
88
11
86
25
1
0
72
0.93
57333--57538
110
1.9
106
83
4
259
33
20
19
26
1.96
57861--58393
111
4.9
111
87
3
715
35
24
17
21
1.95
57869--58425
221
2.6
217
84
4
746
34
25
17
22
1.95
58957--59038
37
2.2
36
95
2
146
26
20
14
37
1.92
58987--59135
67
2.2
67
84
9
189
29
19
14
36
1.91
59088--59207
33
3.8
32
84
7
147
40
19
9
31
1.83
59104--59201
29
3.2
29
84
10
99
43
17
8
30
1.78
59199--59466
83
3.2
83
83
1
374
32
25
19
23
1.97
59806--59853
20
2.4
20
80
16
55
29
0
0
70
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59901--60020
33
3.7
33
91
4
181
40
20
12
27
1.88
60552--60615
7
9.6
7
77
19
66
25
0
0
75
0.81
60552--60612
4
16.0
4
79
19
60
24
0
0
75
0.80
60552--60620
12
5.1
14
77
22
76
24
1
0
73
0.91
60554--60634
31
2.5
32
80
13
87
20
2
1
75
0.99

Tables:   1

The End!