genome.fa.s3417.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003417.1 Hibiscus syriacus cultivar Beakdansim tig00007195_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80583

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9797--9867	36	2.0	36	94	0	124	59	0	14	26	1.36
9958--9998	11	3.3	12	86	13	57	48	0	4	46	1.23
12340--12382	16	2.7	16	88	0	68	32	2	30	34	1.71
12580--12608	4	7.2	4	100	0	58	75	0	0	24	0.80
12452--12739	142	2.0	142	86	2	400	49	13	13	23	1.77
12745--12809	29	2.2	29	76	10	69	49	3	16	30	1.61
13779--13816	20	1.9	20	100	0	76	36	10	28	23	1.88
19199--19227	15	1.9	15	100	0	58	31	13	6	48	1.69
24032--24079	20	2.4	20	100	0	96	33	37	18	10	1.85
24010--24187	20	8.8	20	74	6	81	37	26	17	17	1.93
24193--24324	20	6.6	20	84	5	167	35	28	16	19	1.94
24155--24324	60	2.8	59	80	4	189	37	27	17	17	1.92
24155--24325	20	8.5	21	81	7	124	37	27	17	17	1.92
24155--24328	40	4.3	40	82	5	172	37	27	17	17	1.92
24707--24777	33	2.2	33	94	0	124	11	23	16	47	1.79
24857--24933	21	3.7	21	81	6	102	48	16	22	12	1.80
24911--24990	33	2.4	33	93	0	133	48	22	20	8	1.76
24918--24974	14	3.7	14	70	20	51	45	22	22	8	1.80
24986--25049	18	3.7	18	76	18	73	10	23	21	43	1.84
25008--25063	14	3.7	14	78	17	67	8	25	23	42	1.82
24991--25112	32	3.5	33	85	13	156	10	24	18	45	1.81
25048--25112	21	3.1	21	82	4	96	10	26	15	47	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25047--25110	20	3.2	20	82	4	92	12	25	15	46	1.81
26056--26080	12	2.1	12	100	0	50	0	28	0	72	0.86
26255--26301	24	2.0	24	87	8	69	38	21	14	25	1.92
26995--27224	20	11.5	20	84	1	228	19	17	25	37	1.93
27211--27293	21	4.0	21	70	6	69	25	15	24	34	1.95
28467--28511	2	22.5	2	100	0	90	48	0	0	51	1.00
30217--30269	3	18.0	3	84	3	72	62	0	0	37	0.96
30525--30890	43	8.6	42	72	15	288	31	21	20	26	1.98
30723--30889	85	2.0	86	90	1	264	31	21	19	26	1.97
31000--31037	12	3.2	12	92	0	67	18	7	34	39	1.80
31700--31759	22	2.7	22	92	5	95	36	13	15	35	1.86
32121--32263	55	2.6	55	91	3	218	27	18	13	40	1.88
32356--34682	580	4.0	581	98	0	4469	30	21	15	32	1.94
36575--36619	7	6.4	7	100	0	90	26	28	28	15	1.96
36609--36649	17	2.4	17	91	0	64	17	21	41	19	1.90
36643--36714	19	3.8	19	92	5	119	25	31	26	16	1.96
36643--36732	38	2.3	39	86	5	121	27	30	24	17	1.97
36645--36716	10	7.5	10	80	9	87	27	31	23	16	1.96
43840--43870	7	4.4	7	100	0	62	25	29	29	16	1.96
43860--43900	17	2.4	17	91	0	64	17	21	41	19	1.90
43894--43964	19	3.7	20	88	5	101	26	29	25	18	1.98
43896--43964	9	7.1	10	76	12	72	27	30	23	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45542--45680	72	1.9	72	91	2	226	33	17	22	26	1.96
50339--50388	12	4.1	12	74	23	50	14	10	10	66	1.46
50791--50834	2	22.0	2	100	0	88	50	0	0	50	1.00
51935--51983	3	17.0	3	82	4	57	63	0	0	36	0.95
51932--51979	12	4.2	12	78	10	64	60	0	0	39	0.97
53765--53861	23	4.2	23	71	7	61	47	16	11	24	1.79
57414--57467	2	27.0	2	100	0	108	50	0	0	50	1.00
57623--57697	16	4.8	16	80	3	73	65	0	1	33	1.01
57623--57701	13	6.5	13	72	22	57	65	0	1	32	1.00
57862--57896	15	2.3	15	90	0	52	68	2	5	22	1.24
58313--58382	35	2.0	35	94	0	122	32	14	11	41	1.81
58931--59924	105	9.5	105	88	2	1347	23	17	25	34	1.96
58931--59924	211	4.7	209	89	2	1399	23	17	25	34	1.96
61075--61110	18	2.0	18	94	0	63	41	33	5	19	1.75
61525--61579	22	2.5	22	96	0	101	25	12	25	36	1.91
62214--62290	33	2.4	32	81	12	88	1	12	7	77	1.03
62226--62285	16	3.9	15	76	22	61	0	13	6	80	0.91
62211--62288	15	5.1	14	78	20	68	1	11	7	79	0.99
66907--66938	2	16.0	2	93	0	55	53	0	0	46	1.00
67415--67439	2	12.5	2	100	0	50	52	0	0	48	1.00
67442--67480	15	2.7	15	84	4	53	69	2	5	23	1.21
67878--67954	33	2.2	33	88	6	109	31	14	12	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67891--67957	33	2.0	34	94	2	118	31	14	11	41	1.83
77301--77332	6	5.3	6	100	0	64	50	0	50	0	1.00

Tables:   1

The End!