Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003418.1 Hibiscus syriacus cultivar Beakdansim tig00007196_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107358

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
201--231
14
2.3
14
94
5
55
35
3
25
35
1.72
2169--2199
16
1.9
16
93
0
53
41
0
12
45
1.42
2420--2444
9
2.8
9
100
0
50
8
12
36
44
1.71
4973--5005
3
11.0
3
100
0
66
33
33
0
33
1.58
6232--6282
25
2.0
25
84
0
66
68
13
1
15
1.30
9799--9831
2
16.5
2
100
0
66
48
0
0
51
1.00
10058--10112
2
28.5
2
82
14
62
45
1
1
50
1.22
10059--10122
32
2.0
32
100
0
128
40
3
3
53
1.33
13718--14254
56
9.7
56
85
3
705
35
17
10
36
1.85
13713--14238
219
2.4
219
86
4
704
35
18
10
35
1.85
14682--14718
19
1.9
19
88
0
56
18
37
13
29
1.90
16549--16574
2
13.0
2
100
0
52
50
0
0
50
1.00
30078--30193
57
2.0
57
94
0
205
28
14
22
34
1.94
30175--30201
4
6.8
4
100
0
54
25
0
48
25
1.52
38770--38801
15
2.1
16
94
5
57
6
25
18
50
1.70
39551--39584
16
2.1
16
94
0
59
32
26
8
32
1.87
42218--42346
69
1.9
69
86
3
188
47
1
3
48
1.27
42281--42337
26
2.2
26
84
9
71
49
1
0
49
1.11
42233--42347
34
3.4
33
75
19
110
48
0
1
48
1.17
44676--44756
31
2.6
32
84
5
103
34
23
8
33
1.85
45730--45760
12
2.6
12
94
0
53
9
19
48
22
1.78
49442--49480
2
19.5
2
100
0
78
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50931--50965
2
17.5
2
100
0
70
51
0
0
48
1.00
56818--56842
7
3.6
7
100
0
50
72
0
28
0
0.86
57570--57946
202
1.9
196
90
3
601
30
14
16
37
1.90
58073--58112
13
3.0
13
82
7
53
60
0
2
37
1.11
58232--58264
14
2.4
14
100
0
66
51
0
0
48
1.00
58620--58670
25
2.0
25
96
0
93
19
7
29
43
1.79
58625--58678
25
2.2
25
86
0
72
18
11
24
46
1.81
60301--60452
78
1.9
80
82
8
184
45
5
6
42
1.52
61026--61083
10
5.7
10
81
4
62
70
0
3
25
1.03
65716--65785
18
3.9
18
84
0
86
42
10
14
32
1.78
70211--70249
20
1.9
21
94
5
71
0
25
0
74
0.82
71539--71571
17
1.9
17
88
11
50
63
0
3
33
1.10
72222--72256
3
12.3
3
88
11
56
37
0
0
62
0.95
72222--72254
14
2.4
14
100
0
66
36
0
0
63
0.95
72606--72997
146
2.7
146
89
0
597
31
20
27
20
1.98
75301--75417
47
2.5
47
91
1
182
31
15
22
30
1.95
76166--76208
6
7.2
6
89
10
70
16
16
18
48
1.81
76166--76208
19
2.4
18
92
7
70
16
16
18
48
1.81
78869--79376
125
4.1
125
92
1
799
32
15
28
23
1.95
80551--80620
36
1.9
36
85
0
95
41
20
17
21
1.90
81040--81250
54
3.9
54
84
3
246
34
18
26
21
1.96
87255--87312
23
2.6
21
83
8
71
39
0
1
58
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88923--89165
51
4.8
51
87
3
341
45
15
14
24
1.83
88916--89165
101
2.5
102
86
3
346
46
15
14
24
1.83
92210--92290
42
1.9
42
92
0
135
33
24
16
25
1.96

Tables:   1

The End!