genome.fa.s342.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000342.1 Hibiscus syriacus cultivar Beakdansim tig00000633_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58257

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2316--2369	24	2.2	24	90	0	81	24	16	20	38	1.92
2539--2563	12	2.1	12	100	0	50	72	0	28	0	0.86
4839--4964	33	3.8	33	86	6	193	42	19	23	15	1.89
4840--4971	65	2.0	66	95	1	239	40	19	22	16	1.91
5127--5163	14	2.6	14	91	0	65	45	24	0	29	1.53
8612--8710	33	3.0	33	87	1	135	40	25	23	11	1.87
8587--8743	20	8.6	19	72	17	118	44	21	21	12	1.84
8748--8814	19	3.5	18	82	11	80	10	16	25	47	1.78
9330--9463	20	6.7	20	84	5	144	25	18	24	31	1.98
9452--9503	20	2.5	21	87	3	70	19	25	17	38	1.93
9330--9484	81	1.9	81	82	2	195	24	20	23	32	1.98
9534--9574	21	2.0	21	85	0	55	34	31	17	17	1.93
9732--9773	22	1.9	22	90	0	66	73	2	4	19	1.12
10397--10459	19	3.2	19	75	4	54	55	12	0	31	1.37
13828--13950	31	4.0	31	94	2	185	36	21	21	20	1.95
15082--15117	13	2.6	15	79	20	51	61	0	36	2	1.11
18157--18279	31	4.0	31	94	2	185	36	21	21	20	1.95
19415--19450	13	2.6	15	79	20	51	61	0	36	2	1.11
22541--22569	15	1.9	15	100	0	58	10	27	27	34	1.89
24324--24364	21	1.9	22	90	5	66	75	0	4	19	0.98
24322--24369	24	2.0	24	83	4	60	77	2	4	16	1.03
25012--25175	76	2.2	76	88	3	242	56	10	2	29	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34746--34777	14	2.3	14	100	0	64	65	6	0	28	1.16
46658--46750	31	3.1	30	84	9	109	39	12	15	32	1.85
49072--49118	23	2.0	24	87	4	69	65	0	4	29	1.11
49638--49723	40	2.2	39	83	4	102	36	15	8	40	1.77
51728--51780	25	2.1	26	82	10	65	26	13	16	43	1.85
57310--57394	31	2.8	31	90	1	127	43	10	9	36	1.72

Tables:   1

The End!